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Image-Based Automated Recognition of 31 Poaceae Species: The Most Relevant Perspectives

Poaceae represent one of the largest plant families in the world. Many species are of great economic importance as food and forage plants while others represent important weeds in agriculture. Although a large number of studies currently address the question of how plants can be best recognized on i...

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Autores principales: Rzanny, Michael, Wittich, Hans Christian, Mäder, Patrick, Deggelmann, Alice, Boho, David, Wäldchen, Jana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8826579/
https://www.ncbi.nlm.nih.gov/pubmed/35154194
http://dx.doi.org/10.3389/fpls.2021.804140
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author Rzanny, Michael
Wittich, Hans Christian
Mäder, Patrick
Deggelmann, Alice
Boho, David
Wäldchen, Jana
author_facet Rzanny, Michael
Wittich, Hans Christian
Mäder, Patrick
Deggelmann, Alice
Boho, David
Wäldchen, Jana
author_sort Rzanny, Michael
collection PubMed
description Poaceae represent one of the largest plant families in the world. Many species are of great economic importance as food and forage plants while others represent important weeds in agriculture. Although a large number of studies currently address the question of how plants can be best recognized on images, there is a lack of studies evaluating specific approaches for uniform species groups considered difficult to identify because they lack obvious visual characteristics. Poaceae represent an example of such a species group, especially when they are non-flowering. Here we present the results from an experiment to automatically identify Poaceae species based on images depicting six well-defined perspectives. One perspective shows the inflorescence while the others show vegetative parts of the plant such as the collar region with the ligule, adaxial and abaxial side of the leaf and culm nodes. For each species we collected 80 observations, each representing a series of six images taken with a smartphone camera. We extract feature representations from the images using five different convolutional neural networks (CNN) trained on objects from different domains and classify them using four state-of-the art classification algorithms. We combine these perspectives via score level fusion. In order to evaluate the potential of identifying non-flowering Poaceae we separately compared perspective combinations either comprising inflorescences or not. We find that for a fusion of all six perspectives, using the best combination of feature extraction CNN and classifier, an accuracy of 96.1% can be achieved. Without the inflorescence, the overall accuracy is still as high as 90.3%. In all but one case the perspective conveying the most information about the species (excluding inflorescence) is the ligule in frontal view. Our results show that even species considered very difficult to identify can achieve high accuracies in automatic identification as long as images depicting suitable perspectives are available. We suggest that our approach could be transferred to other difficult-to-distinguish species groups in order to identify the most relevant perspectives.
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spelling pubmed-88265792022-02-10 Image-Based Automated Recognition of 31 Poaceae Species: The Most Relevant Perspectives Rzanny, Michael Wittich, Hans Christian Mäder, Patrick Deggelmann, Alice Boho, David Wäldchen, Jana Front Plant Sci Plant Science Poaceae represent one of the largest plant families in the world. Many species are of great economic importance as food and forage plants while others represent important weeds in agriculture. Although a large number of studies currently address the question of how plants can be best recognized on images, there is a lack of studies evaluating specific approaches for uniform species groups considered difficult to identify because they lack obvious visual characteristics. Poaceae represent an example of such a species group, especially when they are non-flowering. Here we present the results from an experiment to automatically identify Poaceae species based on images depicting six well-defined perspectives. One perspective shows the inflorescence while the others show vegetative parts of the plant such as the collar region with the ligule, adaxial and abaxial side of the leaf and culm nodes. For each species we collected 80 observations, each representing a series of six images taken with a smartphone camera. We extract feature representations from the images using five different convolutional neural networks (CNN) trained on objects from different domains and classify them using four state-of-the art classification algorithms. We combine these perspectives via score level fusion. In order to evaluate the potential of identifying non-flowering Poaceae we separately compared perspective combinations either comprising inflorescences or not. We find that for a fusion of all six perspectives, using the best combination of feature extraction CNN and classifier, an accuracy of 96.1% can be achieved. Without the inflorescence, the overall accuracy is still as high as 90.3%. In all but one case the perspective conveying the most information about the species (excluding inflorescence) is the ligule in frontal view. Our results show that even species considered very difficult to identify can achieve high accuracies in automatic identification as long as images depicting suitable perspectives are available. We suggest that our approach could be transferred to other difficult-to-distinguish species groups in order to identify the most relevant perspectives. Frontiers Media S.A. 2022-01-26 /pmc/articles/PMC8826579/ /pubmed/35154194 http://dx.doi.org/10.3389/fpls.2021.804140 Text en Copyright © 2022 Rzanny, Wittich, Mäder, Deggelmann, Boho and Wäldchen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Rzanny, Michael
Wittich, Hans Christian
Mäder, Patrick
Deggelmann, Alice
Boho, David
Wäldchen, Jana
Image-Based Automated Recognition of 31 Poaceae Species: The Most Relevant Perspectives
title Image-Based Automated Recognition of 31 Poaceae Species: The Most Relevant Perspectives
title_full Image-Based Automated Recognition of 31 Poaceae Species: The Most Relevant Perspectives
title_fullStr Image-Based Automated Recognition of 31 Poaceae Species: The Most Relevant Perspectives
title_full_unstemmed Image-Based Automated Recognition of 31 Poaceae Species: The Most Relevant Perspectives
title_short Image-Based Automated Recognition of 31 Poaceae Species: The Most Relevant Perspectives
title_sort image-based automated recognition of 31 poaceae species: the most relevant perspectives
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8826579/
https://www.ncbi.nlm.nih.gov/pubmed/35154194
http://dx.doi.org/10.3389/fpls.2021.804140
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