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Characterization and phylogeny of fungi isolated from industrial wastewater using multiple genes

The aim of this study was the isolation and molecular characterization of fungi from untreated refinery effluent by using multiple conserved genes. The Fungi isolated were characterized based on PCR amplification and genomic sequencing of the internal transcribed spacer region (ITS), partial β-tubul...

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Autores principales: Ezeonuegbu, Blessing Amaka, Abdullahi, Machido Dauda, Whong, Clement M. Z., Sohunago, Japhet Wisdom, Kassem, Hazem S., Yaro, Clement Ameh, Hetta, Helal F., Mostafa-Hedeab, Gomaa, Zouganelis, George D., Batiha, Gaber El-Saber
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8827091/
https://www.ncbi.nlm.nih.gov/pubmed/35136108
http://dx.doi.org/10.1038/s41598-022-05820-9
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author Ezeonuegbu, Blessing Amaka
Abdullahi, Machido Dauda
Whong, Clement M. Z.
Sohunago, Japhet Wisdom
Kassem, Hazem S.
Yaro, Clement Ameh
Hetta, Helal F.
Mostafa-Hedeab, Gomaa
Zouganelis, George D.
Batiha, Gaber El-Saber
author_facet Ezeonuegbu, Blessing Amaka
Abdullahi, Machido Dauda
Whong, Clement M. Z.
Sohunago, Japhet Wisdom
Kassem, Hazem S.
Yaro, Clement Ameh
Hetta, Helal F.
Mostafa-Hedeab, Gomaa
Zouganelis, George D.
Batiha, Gaber El-Saber
author_sort Ezeonuegbu, Blessing Amaka
collection PubMed
description The aim of this study was the isolation and molecular characterization of fungi from untreated refinery effluent by using multiple conserved genes. The Fungi isolated were characterized based on PCR amplification and genomic sequencing of the internal transcribed spacer region (ITS), partial β-tubulin (BenA), calmodulin (CaM), and RNA polymerase second large subunit (RPB2) genes, along with morphological characterization. The obtained sequences were subjected to BLAST analysis and the corresponding fungal isolates were assigned species names after comparison with representative sequences available in GenBank. Fifteen (15) Fungi species belonging to four genera of Aspergillus, Penicillium, Fusarium, and Trichoderma with Aspergillus as the predominant genus were identified. Therefore these genes should be used as molecular markers for species level identification of fungi (especially Aspergillus and Penicillium as proven in this study.
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spelling pubmed-88270912022-02-10 Characterization and phylogeny of fungi isolated from industrial wastewater using multiple genes Ezeonuegbu, Blessing Amaka Abdullahi, Machido Dauda Whong, Clement M. Z. Sohunago, Japhet Wisdom Kassem, Hazem S. Yaro, Clement Ameh Hetta, Helal F. Mostafa-Hedeab, Gomaa Zouganelis, George D. Batiha, Gaber El-Saber Sci Rep Article The aim of this study was the isolation and molecular characterization of fungi from untreated refinery effluent by using multiple conserved genes. The Fungi isolated were characterized based on PCR amplification and genomic sequencing of the internal transcribed spacer region (ITS), partial β-tubulin (BenA), calmodulin (CaM), and RNA polymerase second large subunit (RPB2) genes, along with morphological characterization. The obtained sequences were subjected to BLAST analysis and the corresponding fungal isolates were assigned species names after comparison with representative sequences available in GenBank. Fifteen (15) Fungi species belonging to four genera of Aspergillus, Penicillium, Fusarium, and Trichoderma with Aspergillus as the predominant genus were identified. Therefore these genes should be used as molecular markers for species level identification of fungi (especially Aspergillus and Penicillium as proven in this study. Nature Publishing Group UK 2022-02-08 /pmc/articles/PMC8827091/ /pubmed/35136108 http://dx.doi.org/10.1038/s41598-022-05820-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ezeonuegbu, Blessing Amaka
Abdullahi, Machido Dauda
Whong, Clement M. Z.
Sohunago, Japhet Wisdom
Kassem, Hazem S.
Yaro, Clement Ameh
Hetta, Helal F.
Mostafa-Hedeab, Gomaa
Zouganelis, George D.
Batiha, Gaber El-Saber
Characterization and phylogeny of fungi isolated from industrial wastewater using multiple genes
title Characterization and phylogeny of fungi isolated from industrial wastewater using multiple genes
title_full Characterization and phylogeny of fungi isolated from industrial wastewater using multiple genes
title_fullStr Characterization and phylogeny of fungi isolated from industrial wastewater using multiple genes
title_full_unstemmed Characterization and phylogeny of fungi isolated from industrial wastewater using multiple genes
title_short Characterization and phylogeny of fungi isolated from industrial wastewater using multiple genes
title_sort characterization and phylogeny of fungi isolated from industrial wastewater using multiple genes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8827091/
https://www.ncbi.nlm.nih.gov/pubmed/35136108
http://dx.doi.org/10.1038/s41598-022-05820-9
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