Cargando…
Parametric Copula-GP model for analyzing multidimensional neuronal and behavioral relationships
One of the main goals of current systems neuroscience is to understand how neuronal populations integrate sensory information to inform behavior. However, estimating stimulus or behavioral information that is encoded in high-dimensional neuronal populations is challenging. We propose a method based...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8827448/ https://www.ncbi.nlm.nih.gov/pubmed/35089913 http://dx.doi.org/10.1371/journal.pcbi.1009799 |
_version_ | 1784647630638284800 |
---|---|
author | Kudryashova, Nina Amvrosiadis, Theoklitos Dupuy, Nathalie Rochefort, Nathalie Onken, Arno |
author_facet | Kudryashova, Nina Amvrosiadis, Theoklitos Dupuy, Nathalie Rochefort, Nathalie Onken, Arno |
author_sort | Kudryashova, Nina |
collection | PubMed |
description | One of the main goals of current systems neuroscience is to understand how neuronal populations integrate sensory information to inform behavior. However, estimating stimulus or behavioral information that is encoded in high-dimensional neuronal populations is challenging. We propose a method based on parametric copulas which allows modeling joint distributions of neuronal and behavioral variables characterized by different statistics and timescales. To account for temporal or spatial changes in dependencies between variables, we model varying copula parameters by means of Gaussian Processes (GP). We validate the resulting Copula-GP framework on synthetic data and on neuronal and behavioral recordings obtained in awake mice. We show that the use of a parametric description of the high-dimensional dependence structure in our method provides better accuracy in mutual information estimation in higher dimensions compared to other non-parametric methods. Moreover, by quantifying the redundancy between neuronal and behavioral variables, our model exposed the location of the reward zone in an unsupervised manner (i.e., without using any explicit cues about the task structure). These results demonstrate that the Copula-GP framework is particularly useful for the analysis of complex multidimensional relationships between neuronal, sensory and behavioral variables. |
format | Online Article Text |
id | pubmed-8827448 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-88274482022-02-10 Parametric Copula-GP model for analyzing multidimensional neuronal and behavioral relationships Kudryashova, Nina Amvrosiadis, Theoklitos Dupuy, Nathalie Rochefort, Nathalie Onken, Arno PLoS Comput Biol Research Article One of the main goals of current systems neuroscience is to understand how neuronal populations integrate sensory information to inform behavior. However, estimating stimulus or behavioral information that is encoded in high-dimensional neuronal populations is challenging. We propose a method based on parametric copulas which allows modeling joint distributions of neuronal and behavioral variables characterized by different statistics and timescales. To account for temporal or spatial changes in dependencies between variables, we model varying copula parameters by means of Gaussian Processes (GP). We validate the resulting Copula-GP framework on synthetic data and on neuronal and behavioral recordings obtained in awake mice. We show that the use of a parametric description of the high-dimensional dependence structure in our method provides better accuracy in mutual information estimation in higher dimensions compared to other non-parametric methods. Moreover, by quantifying the redundancy between neuronal and behavioral variables, our model exposed the location of the reward zone in an unsupervised manner (i.e., without using any explicit cues about the task structure). These results demonstrate that the Copula-GP framework is particularly useful for the analysis of complex multidimensional relationships between neuronal, sensory and behavioral variables. Public Library of Science 2022-01-28 /pmc/articles/PMC8827448/ /pubmed/35089913 http://dx.doi.org/10.1371/journal.pcbi.1009799 Text en © 2022 Kudryashova et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Kudryashova, Nina Amvrosiadis, Theoklitos Dupuy, Nathalie Rochefort, Nathalie Onken, Arno Parametric Copula-GP model for analyzing multidimensional neuronal and behavioral relationships |
title | Parametric Copula-GP model for analyzing multidimensional neuronal and behavioral relationships |
title_full | Parametric Copula-GP model for analyzing multidimensional neuronal and behavioral relationships |
title_fullStr | Parametric Copula-GP model for analyzing multidimensional neuronal and behavioral relationships |
title_full_unstemmed | Parametric Copula-GP model for analyzing multidimensional neuronal and behavioral relationships |
title_short | Parametric Copula-GP model for analyzing multidimensional neuronal and behavioral relationships |
title_sort | parametric copula-gp model for analyzing multidimensional neuronal and behavioral relationships |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8827448/ https://www.ncbi.nlm.nih.gov/pubmed/35089913 http://dx.doi.org/10.1371/journal.pcbi.1009799 |
work_keys_str_mv | AT kudryashovanina parametriccopulagpmodelforanalyzingmultidimensionalneuronalandbehavioralrelationships AT amvrosiadistheoklitos parametriccopulagpmodelforanalyzingmultidimensionalneuronalandbehavioralrelationships AT dupuynathalie parametriccopulagpmodelforanalyzingmultidimensionalneuronalandbehavioralrelationships AT rochefortnathalie parametriccopulagpmodelforanalyzingmultidimensionalneuronalandbehavioralrelationships AT onkenarno parametriccopulagpmodelforanalyzingmultidimensionalneuronalandbehavioralrelationships |