Cargando…

Prognostic Implications of Pyroptosis-Related Gene Signatures in Lung Squamous Cell Carcinoma

Background: Lung squamous cell carcinoma (LUSC) has been a highly malignant tumor with very poor prognosis. It is confirmed that pyroptosis refers to the deaths of cells in a programmed and inflammatory manner. Nevertheless, the correlation between expression of genes related with pyroptosis and the...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Tingting, Liu, Huanqing, Dong, Chunsheng, Lyu, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8829032/
https://www.ncbi.nlm.nih.gov/pubmed/35153782
http://dx.doi.org/10.3389/fphar.2022.806995
_version_ 1784647977723232256
author Li, Tingting
Liu, Huanqing
Dong, Chunsheng
Lyu, Jun
author_facet Li, Tingting
Liu, Huanqing
Dong, Chunsheng
Lyu, Jun
author_sort Li, Tingting
collection PubMed
description Background: Lung squamous cell carcinoma (LUSC) has been a highly malignant tumor with very poor prognosis. It is confirmed that pyroptosis refers to the deaths of cells in a programmed and inflammatory manner. Nevertheless, the correlation between expression of genes related with pyroptosis and their prognosis remains uncertain in LUSC. Methods: Utilization of The Cancer Genome Atlas (TCGA) cohort has been done for evaluating the prognostics of pyroptosis-related genes for survival and constructing a signature with multiple genes. The least absolute shrinkage and selection operator (LASSO) Cox regression was performed for establishing such pyroptosis-related gene signature. Results: Eventually, identification of 28 genes in relation to pyroptosis was made in LUSC and healthy lung tissues. Upon the basis of these differentially-expressed genes (DEGs), the patients of LUSC can be divided into two subtypes. Nine gene signatures were established using LASSO. The surviving rate for low-risk group was apparently greater in contrast with the high-risk group (p < .001). According to our finding, risk score worked as an independent predictive factor of OS among LUSC sufferers in combination with clinical characteristics. In line with Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses, the enrichment of immunity-related genes and decreasing immunity status among the high-risk group. Conclusion: Genes in relation with pyroptosis played an essential role in tumor immunity, which is capable of predicting the prognosis for LUSCs.
format Online
Article
Text
id pubmed-8829032
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-88290322022-02-11 Prognostic Implications of Pyroptosis-Related Gene Signatures in Lung Squamous Cell Carcinoma Li, Tingting Liu, Huanqing Dong, Chunsheng Lyu, Jun Front Pharmacol Pharmacology Background: Lung squamous cell carcinoma (LUSC) has been a highly malignant tumor with very poor prognosis. It is confirmed that pyroptosis refers to the deaths of cells in a programmed and inflammatory manner. Nevertheless, the correlation between expression of genes related with pyroptosis and their prognosis remains uncertain in LUSC. Methods: Utilization of The Cancer Genome Atlas (TCGA) cohort has been done for evaluating the prognostics of pyroptosis-related genes for survival and constructing a signature with multiple genes. The least absolute shrinkage and selection operator (LASSO) Cox regression was performed for establishing such pyroptosis-related gene signature. Results: Eventually, identification of 28 genes in relation to pyroptosis was made in LUSC and healthy lung tissues. Upon the basis of these differentially-expressed genes (DEGs), the patients of LUSC can be divided into two subtypes. Nine gene signatures were established using LASSO. The surviving rate for low-risk group was apparently greater in contrast with the high-risk group (p < .001). According to our finding, risk score worked as an independent predictive factor of OS among LUSC sufferers in combination with clinical characteristics. In line with Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses, the enrichment of immunity-related genes and decreasing immunity status among the high-risk group. Conclusion: Genes in relation with pyroptosis played an essential role in tumor immunity, which is capable of predicting the prognosis for LUSCs. Frontiers Media S.A. 2022-01-27 /pmc/articles/PMC8829032/ /pubmed/35153782 http://dx.doi.org/10.3389/fphar.2022.806995 Text en Copyright © 2022 Li, Liu, Dong and Lyu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pharmacology
Li, Tingting
Liu, Huanqing
Dong, Chunsheng
Lyu, Jun
Prognostic Implications of Pyroptosis-Related Gene Signatures in Lung Squamous Cell Carcinoma
title Prognostic Implications of Pyroptosis-Related Gene Signatures in Lung Squamous Cell Carcinoma
title_full Prognostic Implications of Pyroptosis-Related Gene Signatures in Lung Squamous Cell Carcinoma
title_fullStr Prognostic Implications of Pyroptosis-Related Gene Signatures in Lung Squamous Cell Carcinoma
title_full_unstemmed Prognostic Implications of Pyroptosis-Related Gene Signatures in Lung Squamous Cell Carcinoma
title_short Prognostic Implications of Pyroptosis-Related Gene Signatures in Lung Squamous Cell Carcinoma
title_sort prognostic implications of pyroptosis-related gene signatures in lung squamous cell carcinoma
topic Pharmacology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8829032/
https://www.ncbi.nlm.nih.gov/pubmed/35153782
http://dx.doi.org/10.3389/fphar.2022.806995
work_keys_str_mv AT litingting prognosticimplicationsofpyroptosisrelatedgenesignaturesinlungsquamouscellcarcinoma
AT liuhuanqing prognosticimplicationsofpyroptosisrelatedgenesignaturesinlungsquamouscellcarcinoma
AT dongchunsheng prognosticimplicationsofpyroptosisrelatedgenesignaturesinlungsquamouscellcarcinoma
AT lyujun prognosticimplicationsofpyroptosisrelatedgenesignaturesinlungsquamouscellcarcinoma