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Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer

Long noncoding RNAs (lncRNAs) are recently implicated in modifying immunology in colorectal cancer (CRC). Nevertheless, the clinical significance of immune-related lncRNAs remains largely unexplored. In this study, we develope a machine learning-based integrative procedure for constructing a consens...

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Autores principales: Liu, Zaoqu, Liu, Long, Weng, Siyuan, Guo, Chunguang, Dang, Qin, Xu, Hui, Wang, Libo, Lu, Taoyuan, Zhang, Yuyuan, Sun, Zhenqiang, Han, Xinwei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8831564/
https://www.ncbi.nlm.nih.gov/pubmed/35145098
http://dx.doi.org/10.1038/s41467-022-28421-6
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author Liu, Zaoqu
Liu, Long
Weng, Siyuan
Guo, Chunguang
Dang, Qin
Xu, Hui
Wang, Libo
Lu, Taoyuan
Zhang, Yuyuan
Sun, Zhenqiang
Han, Xinwei
author_facet Liu, Zaoqu
Liu, Long
Weng, Siyuan
Guo, Chunguang
Dang, Qin
Xu, Hui
Wang, Libo
Lu, Taoyuan
Zhang, Yuyuan
Sun, Zhenqiang
Han, Xinwei
author_sort Liu, Zaoqu
collection PubMed
description Long noncoding RNAs (lncRNAs) are recently implicated in modifying immunology in colorectal cancer (CRC). Nevertheless, the clinical significance of immune-related lncRNAs remains largely unexplored. In this study, we develope a machine learning-based integrative procedure for constructing a consensus immune-related lncRNA signature (IRLS). IRLS is an independent risk factor for overall survival and displays stable and powerful performance, but only demonstrates limited predictive value for relapse-free survival. Additionally, IRLS possesses distinctly superior accuracy than traditional clinical variables, molecular features, and 109 published signatures. Besides, the high-risk group is sensitive to fluorouracil-based adjuvant chemotherapy, while the low-risk group benefits more from bevacizumab. Notably, the low-risk group displays abundant lymphocyte infiltration, high expression of CD8A and PD-L1, and a response to pembrolizumab. Taken together, IRLS could serve as a robust and promising tool to improve clinical outcomes for individual CRC patients.
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spelling pubmed-88315642022-03-04 Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer Liu, Zaoqu Liu, Long Weng, Siyuan Guo, Chunguang Dang, Qin Xu, Hui Wang, Libo Lu, Taoyuan Zhang, Yuyuan Sun, Zhenqiang Han, Xinwei Nat Commun Article Long noncoding RNAs (lncRNAs) are recently implicated in modifying immunology in colorectal cancer (CRC). Nevertheless, the clinical significance of immune-related lncRNAs remains largely unexplored. In this study, we develope a machine learning-based integrative procedure for constructing a consensus immune-related lncRNA signature (IRLS). IRLS is an independent risk factor for overall survival and displays stable and powerful performance, but only demonstrates limited predictive value for relapse-free survival. Additionally, IRLS possesses distinctly superior accuracy than traditional clinical variables, molecular features, and 109 published signatures. Besides, the high-risk group is sensitive to fluorouracil-based adjuvant chemotherapy, while the low-risk group benefits more from bevacizumab. Notably, the low-risk group displays abundant lymphocyte infiltration, high expression of CD8A and PD-L1, and a response to pembrolizumab. Taken together, IRLS could serve as a robust and promising tool to improve clinical outcomes for individual CRC patients. Nature Publishing Group UK 2022-02-10 /pmc/articles/PMC8831564/ /pubmed/35145098 http://dx.doi.org/10.1038/s41467-022-28421-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Liu, Zaoqu
Liu, Long
Weng, Siyuan
Guo, Chunguang
Dang, Qin
Xu, Hui
Wang, Libo
Lu, Taoyuan
Zhang, Yuyuan
Sun, Zhenqiang
Han, Xinwei
Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer
title Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer
title_full Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer
title_fullStr Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer
title_full_unstemmed Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer
title_short Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer
title_sort machine learning-based integration develops an immune-derived lncrna signature for improving outcomes in colorectal cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8831564/
https://www.ncbi.nlm.nih.gov/pubmed/35145098
http://dx.doi.org/10.1038/s41467-022-28421-6
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