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Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma

Pancreatic adenocarcinoma (PAAD) is a deadly digestive system tumor with a poor prognosis. Recently, necroptosis has been considered as a type of inflammatory programmed cell death. However, the expression of necroptosis-related genes (NRGs) in PAAD and their associations with prognosis remain uncle...

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Autores principales: Wu, Zixuan, Huang, Xuyan, Cai, Minjie, Huang, Peidong, Guan, Zunhui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8833111/
https://www.ncbi.nlm.nih.gov/pubmed/35077391
http://dx.doi.org/10.18632/aging.203846
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author Wu, Zixuan
Huang, Xuyan
Cai, Minjie
Huang, Peidong
Guan, Zunhui
author_facet Wu, Zixuan
Huang, Xuyan
Cai, Minjie
Huang, Peidong
Guan, Zunhui
author_sort Wu, Zixuan
collection PubMed
description Pancreatic adenocarcinoma (PAAD) is a deadly digestive system tumor with a poor prognosis. Recently, necroptosis has been considered as a type of inflammatory programmed cell death. However, the expression of necroptosis-related genes (NRGs) in PAAD and their associations with prognosis remain unclear. NRGs’ prediction potential in PAAD samples from The TCGA and GEO datasets was investigated. The prediction model was constructed using Lasso regression. Co-expression analysis showed that gene expression was closely related to necroptosis. NRGs were shown to be somewhat overexpressed in high-risk people even when no other clinical symptoms were present, indicating that they may be utilized in a model to predict PAAD prognosis. GSEA showed immunological and tumor-related pathways in the high-risk group. Based on the findings, immune function and m6A genes differ significantly between the low-risk and high-risk groups. MET, AM25C, MROH9, MYEOV, FAM111B, Y6D, and PPP2R3A might be related to the oncology process for PAAD patients. Moreover, CASKIN2, TLE2, USP20, SPRN, ARSG, MIR106B, and MIR98 might be associated with low-risk patients with PAAD. NRGs and the relationship of the immune function, immune checkpoints, and m6A gene expression with NRGs in PAAD may be considered as potential therapeutic targets that should be further studied.
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spelling pubmed-88331112022-02-14 Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma Wu, Zixuan Huang, Xuyan Cai, Minjie Huang, Peidong Guan, Zunhui Aging (Albany NY) Research Paper Pancreatic adenocarcinoma (PAAD) is a deadly digestive system tumor with a poor prognosis. Recently, necroptosis has been considered as a type of inflammatory programmed cell death. However, the expression of necroptosis-related genes (NRGs) in PAAD and their associations with prognosis remain unclear. NRGs’ prediction potential in PAAD samples from The TCGA and GEO datasets was investigated. The prediction model was constructed using Lasso regression. Co-expression analysis showed that gene expression was closely related to necroptosis. NRGs were shown to be somewhat overexpressed in high-risk people even when no other clinical symptoms were present, indicating that they may be utilized in a model to predict PAAD prognosis. GSEA showed immunological and tumor-related pathways in the high-risk group. Based on the findings, immune function and m6A genes differ significantly between the low-risk and high-risk groups. MET, AM25C, MROH9, MYEOV, FAM111B, Y6D, and PPP2R3A might be related to the oncology process for PAAD patients. Moreover, CASKIN2, TLE2, USP20, SPRN, ARSG, MIR106B, and MIR98 might be associated with low-risk patients with PAAD. NRGs and the relationship of the immune function, immune checkpoints, and m6A gene expression with NRGs in PAAD may be considered as potential therapeutic targets that should be further studied. Impact Journals 2022-01-24 /pmc/articles/PMC8833111/ /pubmed/35077391 http://dx.doi.org/10.18632/aging.203846 Text en Copyright: © 2022 Wu et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Wu, Zixuan
Huang, Xuyan
Cai, Minjie
Huang, Peidong
Guan, Zunhui
Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma
title Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma
title_full Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma
title_fullStr Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma
title_full_unstemmed Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma
title_short Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma
title_sort novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8833111/
https://www.ncbi.nlm.nih.gov/pubmed/35077391
http://dx.doi.org/10.18632/aging.203846
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