Cargando…

Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Discriminates the Elderly with a Low and High Percentage of Pathogenic CD4+ T Cells

In the aging process, the presence of interleukin (IL)-17-producing CD4+CD28-NKG2D+T cells (called pathogenic CD4+ T cells) is strongly associated with inflammation and the development of various diseases. Thus, their presence needs to be monitored. The emergence of attenuated total reflectance-Four...

Descripción completa

Detalles Bibliográficos
Autores principales: Praja, Rian Ka, Wongwattanakul, Molin, Tippayawat, Patcharaporn, Phoksawat, Wisitsak, Jumnainsong, Amonrat, Sornkayasit, Kanda, Leelayuwat, Chanvit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8834052/
https://www.ncbi.nlm.nih.gov/pubmed/35159268
http://dx.doi.org/10.3390/cells11030458
_version_ 1784649086931042304
author Praja, Rian Ka
Wongwattanakul, Molin
Tippayawat, Patcharaporn
Phoksawat, Wisitsak
Jumnainsong, Amonrat
Sornkayasit, Kanda
Leelayuwat, Chanvit
author_facet Praja, Rian Ka
Wongwattanakul, Molin
Tippayawat, Patcharaporn
Phoksawat, Wisitsak
Jumnainsong, Amonrat
Sornkayasit, Kanda
Leelayuwat, Chanvit
author_sort Praja, Rian Ka
collection PubMed
description In the aging process, the presence of interleukin (IL)-17-producing CD4+CD28-NKG2D+T cells (called pathogenic CD4+ T cells) is strongly associated with inflammation and the development of various diseases. Thus, their presence needs to be monitored. The emergence of attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy empowered with machine learning is a breakthrough in the field of medical diagnostics. This study aimed to discriminate between the elderly with a low percentage (LP; ≤3%) and a high percentage (HP; ≥6%) of pathogenic CD4+CD28-NKG2D+IL17+ T cells by utilizing ATR-FTIR coupled with machine learning algorithms. ATR spectra of serum, exosome, and HDL from both groups were explored in this study. Only exosome spectra in the 1700–1500 cm(−1) region exhibited possible discrimination for the LP and HP groups based on principal component analysis (PCA). Furthermore, partial least square-discriminant analysis (PLS-DA) could differentiate both groups using the 1700–1500 cm(−1) region of exosome ATR spectra with 64% accuracy, 69% sensitivity, and 61% specificity. To obtain better classification performance, several spectral models were then established using advanced machine learning algorithms, including J48 decision tree, support vector machine (SVM), random forest (RF), and neural network (NN). Herein, NN was considered to be the best model with an accuracy of 100%, sensitivity of 100%, and specificity of 100% using serum spectra in the region of 1800–900 cm(−1). Exosome spectra in the 1700–1500 and combined 3000–2800 and 1800–900 cm(−1) regions using the NN algorithm gave the same accuracy performance of 95% with a variation in sensitivity and specificity. HDL spectra with the NN algorithm also showed excellent test performance in the 1800–900 cm(−1) region with 97% accuracy, 100% sensitivity, and 95% specificity. This study demonstrates that ATR-FTIR coupled with machine learning algorithms can be used to study immunosenescence. Furthermore, this approach can possibly be applied to monitor the presence of pathogenic CD4+ T cells in the elderly. Due to the limited number of samples used in this study, it is necessary to conduct a large-scale study to obtain more robust classification models and to assess the true clinical diagnostic performance.
format Online
Article
Text
id pubmed-8834052
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-88340522022-02-12 Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Discriminates the Elderly with a Low and High Percentage of Pathogenic CD4+ T Cells Praja, Rian Ka Wongwattanakul, Molin Tippayawat, Patcharaporn Phoksawat, Wisitsak Jumnainsong, Amonrat Sornkayasit, Kanda Leelayuwat, Chanvit Cells Article In the aging process, the presence of interleukin (IL)-17-producing CD4+CD28-NKG2D+T cells (called pathogenic CD4+ T cells) is strongly associated with inflammation and the development of various diseases. Thus, their presence needs to be monitored. The emergence of attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy empowered with machine learning is a breakthrough in the field of medical diagnostics. This study aimed to discriminate between the elderly with a low percentage (LP; ≤3%) and a high percentage (HP; ≥6%) of pathogenic CD4+CD28-NKG2D+IL17+ T cells by utilizing ATR-FTIR coupled with machine learning algorithms. ATR spectra of serum, exosome, and HDL from both groups were explored in this study. Only exosome spectra in the 1700–1500 cm(−1) region exhibited possible discrimination for the LP and HP groups based on principal component analysis (PCA). Furthermore, partial least square-discriminant analysis (PLS-DA) could differentiate both groups using the 1700–1500 cm(−1) region of exosome ATR spectra with 64% accuracy, 69% sensitivity, and 61% specificity. To obtain better classification performance, several spectral models were then established using advanced machine learning algorithms, including J48 decision tree, support vector machine (SVM), random forest (RF), and neural network (NN). Herein, NN was considered to be the best model with an accuracy of 100%, sensitivity of 100%, and specificity of 100% using serum spectra in the region of 1800–900 cm(−1). Exosome spectra in the 1700–1500 and combined 3000–2800 and 1800–900 cm(−1) regions using the NN algorithm gave the same accuracy performance of 95% with a variation in sensitivity and specificity. HDL spectra with the NN algorithm also showed excellent test performance in the 1800–900 cm(−1) region with 97% accuracy, 100% sensitivity, and 95% specificity. This study demonstrates that ATR-FTIR coupled with machine learning algorithms can be used to study immunosenescence. Furthermore, this approach can possibly be applied to monitor the presence of pathogenic CD4+ T cells in the elderly. Due to the limited number of samples used in this study, it is necessary to conduct a large-scale study to obtain more robust classification models and to assess the true clinical diagnostic performance. MDPI 2022-01-28 /pmc/articles/PMC8834052/ /pubmed/35159268 http://dx.doi.org/10.3390/cells11030458 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Praja, Rian Ka
Wongwattanakul, Molin
Tippayawat, Patcharaporn
Phoksawat, Wisitsak
Jumnainsong, Amonrat
Sornkayasit, Kanda
Leelayuwat, Chanvit
Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Discriminates the Elderly with a Low and High Percentage of Pathogenic CD4+ T Cells
title Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Discriminates the Elderly with a Low and High Percentage of Pathogenic CD4+ T Cells
title_full Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Discriminates the Elderly with a Low and High Percentage of Pathogenic CD4+ T Cells
title_fullStr Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Discriminates the Elderly with a Low and High Percentage of Pathogenic CD4+ T Cells
title_full_unstemmed Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Discriminates the Elderly with a Low and High Percentage of Pathogenic CD4+ T Cells
title_short Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Discriminates the Elderly with a Low and High Percentage of Pathogenic CD4+ T Cells
title_sort attenuated total reflectance-fourier transform infrared (atr-ftir) spectroscopy discriminates the elderly with a low and high percentage of pathogenic cd4+ t cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8834052/
https://www.ncbi.nlm.nih.gov/pubmed/35159268
http://dx.doi.org/10.3390/cells11030458
work_keys_str_mv AT prajarianka attenuatedtotalreflectancefouriertransforminfraredatrftirspectroscopydiscriminatestheelderlywithalowandhighpercentageofpathogeniccd4tcells
AT wongwattanakulmolin attenuatedtotalreflectancefouriertransforminfraredatrftirspectroscopydiscriminatestheelderlywithalowandhighpercentageofpathogeniccd4tcells
AT tippayawatpatcharaporn attenuatedtotalreflectancefouriertransforminfraredatrftirspectroscopydiscriminatestheelderlywithalowandhighpercentageofpathogeniccd4tcells
AT phoksawatwisitsak attenuatedtotalreflectancefouriertransforminfraredatrftirspectroscopydiscriminatestheelderlywithalowandhighpercentageofpathogeniccd4tcells
AT jumnainsongamonrat attenuatedtotalreflectancefouriertransforminfraredatrftirspectroscopydiscriminatestheelderlywithalowandhighpercentageofpathogeniccd4tcells
AT sornkayasitkanda attenuatedtotalreflectancefouriertransforminfraredatrftirspectroscopydiscriminatestheelderlywithalowandhighpercentageofpathogeniccd4tcells
AT leelayuwatchanvit attenuatedtotalreflectancefouriertransforminfraredatrftirspectroscopydiscriminatestheelderlywithalowandhighpercentageofpathogeniccd4tcells