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Data-driven testing program improves detection of COVID-19 cases and reduces community transmission

COVID-19 remains a global threat in the face of emerging SARS-CoV-2 variants and gaps in vaccine administration and availability. In this study, we analyze a data-driven COVID-19 testing program implemented at a mid-sized university, which utilized two simple, diverse, and easily interpretable machi...

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Autores principales: Krieg, Steven J., Avendano, Carolina, Grantham-Brown, Evan, Lilienfeld Asbun, Aaron, Schnur, Jennifer J., Miranda, Marie Lynn, Chawla, Nitesh V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8837751/
https://www.ncbi.nlm.nih.gov/pubmed/35149754
http://dx.doi.org/10.1038/s41746-022-00562-4
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author Krieg, Steven J.
Avendano, Carolina
Grantham-Brown, Evan
Lilienfeld Asbun, Aaron
Schnur, Jennifer J.
Miranda, Marie Lynn
Chawla, Nitesh V.
author_facet Krieg, Steven J.
Avendano, Carolina
Grantham-Brown, Evan
Lilienfeld Asbun, Aaron
Schnur, Jennifer J.
Miranda, Marie Lynn
Chawla, Nitesh V.
author_sort Krieg, Steven J.
collection PubMed
description COVID-19 remains a global threat in the face of emerging SARS-CoV-2 variants and gaps in vaccine administration and availability. In this study, we analyze a data-driven COVID-19 testing program implemented at a mid-sized university, which utilized two simple, diverse, and easily interpretable machine learning models to predict which students were at elevated risk and should be tested. The program produced a positivity rate of 0.53% (95% CI 0.34–0.77%) from 20,862 tests, with 1.49% (95% CI 1.15–1.89%) of students testing positive within five days of the initial test—a significant increase from the general surveillance baseline, which produced a positivity rate of 0.37% (95% CI 0.28–0.47%) with 0.67% (95% CI 0.55–0.81%) testing positive within five days. Close contacts who were predicted by the data-driven models were tested much more quickly on average (0.94 days from reported exposure; 95% CI 0.78–1.11) than those who were manually contact traced (1.92 days; 95% CI 1.81–2.02). We further discuss how other universities, business, and organizations could adopt similar strategies to help quickly identify positive cases and reduce community transmission.
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spelling pubmed-88377512022-03-02 Data-driven testing program improves detection of COVID-19 cases and reduces community transmission Krieg, Steven J. Avendano, Carolina Grantham-Brown, Evan Lilienfeld Asbun, Aaron Schnur, Jennifer J. Miranda, Marie Lynn Chawla, Nitesh V. NPJ Digit Med Article COVID-19 remains a global threat in the face of emerging SARS-CoV-2 variants and gaps in vaccine administration and availability. In this study, we analyze a data-driven COVID-19 testing program implemented at a mid-sized university, which utilized two simple, diverse, and easily interpretable machine learning models to predict which students were at elevated risk and should be tested. The program produced a positivity rate of 0.53% (95% CI 0.34–0.77%) from 20,862 tests, with 1.49% (95% CI 1.15–1.89%) of students testing positive within five days of the initial test—a significant increase from the general surveillance baseline, which produced a positivity rate of 0.37% (95% CI 0.28–0.47%) with 0.67% (95% CI 0.55–0.81%) testing positive within five days. Close contacts who were predicted by the data-driven models were tested much more quickly on average (0.94 days from reported exposure; 95% CI 0.78–1.11) than those who were manually contact traced (1.92 days; 95% CI 1.81–2.02). We further discuss how other universities, business, and organizations could adopt similar strategies to help quickly identify positive cases and reduce community transmission. Nature Publishing Group UK 2022-02-11 /pmc/articles/PMC8837751/ /pubmed/35149754 http://dx.doi.org/10.1038/s41746-022-00562-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Krieg, Steven J.
Avendano, Carolina
Grantham-Brown, Evan
Lilienfeld Asbun, Aaron
Schnur, Jennifer J.
Miranda, Marie Lynn
Chawla, Nitesh V.
Data-driven testing program improves detection of COVID-19 cases and reduces community transmission
title Data-driven testing program improves detection of COVID-19 cases and reduces community transmission
title_full Data-driven testing program improves detection of COVID-19 cases and reduces community transmission
title_fullStr Data-driven testing program improves detection of COVID-19 cases and reduces community transmission
title_full_unstemmed Data-driven testing program improves detection of COVID-19 cases and reduces community transmission
title_short Data-driven testing program improves detection of COVID-19 cases and reduces community transmission
title_sort data-driven testing program improves detection of covid-19 cases and reduces community transmission
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8837751/
https://www.ncbi.nlm.nih.gov/pubmed/35149754
http://dx.doi.org/10.1038/s41746-022-00562-4
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