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Data-informed discovery of hydrolytic nanozymes

Nanozyme is a collection of nanomaterials with enzyme-like activity but higher environmental tolerance and long-term stability than their natural counterparts. Improving the catalytic activity and expanding the category of nanozymes are prerequisites to complement or even supersede enzymes. However,...

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Autores principales: Li, Sirong, Zhou, Zijun, Tie, Zuoxiu, Wang, Bing, Ye, Meng, Du, Lei, Cui, Ran, Liu, Wei, Wan, Cuihong, Liu, Quanyi, Zhao, Sheng, Wang, Quan, Zhang, Yihong, Zhang, Shuo, Zhang, Huigang, Du, Yan, Wei, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8837776/
https://www.ncbi.nlm.nih.gov/pubmed/35149676
http://dx.doi.org/10.1038/s41467-022-28344-2
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author Li, Sirong
Zhou, Zijun
Tie, Zuoxiu
Wang, Bing
Ye, Meng
Du, Lei
Cui, Ran
Liu, Wei
Wan, Cuihong
Liu, Quanyi
Zhao, Sheng
Wang, Quan
Zhang, Yihong
Zhang, Shuo
Zhang, Huigang
Du, Yan
Wei, Hui
author_facet Li, Sirong
Zhou, Zijun
Tie, Zuoxiu
Wang, Bing
Ye, Meng
Du, Lei
Cui, Ran
Liu, Wei
Wan, Cuihong
Liu, Quanyi
Zhao, Sheng
Wang, Quan
Zhang, Yihong
Zhang, Shuo
Zhang, Huigang
Du, Yan
Wei, Hui
author_sort Li, Sirong
collection PubMed
description Nanozyme is a collection of nanomaterials with enzyme-like activity but higher environmental tolerance and long-term stability than their natural counterparts. Improving the catalytic activity and expanding the category of nanozymes are prerequisites to complement or even supersede enzymes. However, the development of hydrolytic nanozymes is still challenged by diverse hydrolytic substrates and following complicated mechanisms. Here, two strategies are informed by data to screen and predict catalytic active sites of MOF (metal–organic framework) based hydrolytic nanozymes: (1) to increase the intrinsic activity by finely tuned Lewis acidity of the metal clusters; (2) to improve the density of active sites by shortening the length of ligands. Finally, as-obtained Ce-FMA-MOF-based hydrolytic nanozyme is capable of cleaving phosphate bonds, amide bonds, glycosidic bonds, and even their mixture, biofilms. This work provides a rational methodology to design hydrolytic nanozyme, enriches the diversity of nanozymes, and potentially sheds light on future evolution of enzyme engineering.
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spelling pubmed-88377762022-03-04 Data-informed discovery of hydrolytic nanozymes Li, Sirong Zhou, Zijun Tie, Zuoxiu Wang, Bing Ye, Meng Du, Lei Cui, Ran Liu, Wei Wan, Cuihong Liu, Quanyi Zhao, Sheng Wang, Quan Zhang, Yihong Zhang, Shuo Zhang, Huigang Du, Yan Wei, Hui Nat Commun Article Nanozyme is a collection of nanomaterials with enzyme-like activity but higher environmental tolerance and long-term stability than their natural counterparts. Improving the catalytic activity and expanding the category of nanozymes are prerequisites to complement or even supersede enzymes. However, the development of hydrolytic nanozymes is still challenged by diverse hydrolytic substrates and following complicated mechanisms. Here, two strategies are informed by data to screen and predict catalytic active sites of MOF (metal–organic framework) based hydrolytic nanozymes: (1) to increase the intrinsic activity by finely tuned Lewis acidity of the metal clusters; (2) to improve the density of active sites by shortening the length of ligands. Finally, as-obtained Ce-FMA-MOF-based hydrolytic nanozyme is capable of cleaving phosphate bonds, amide bonds, glycosidic bonds, and even their mixture, biofilms. This work provides a rational methodology to design hydrolytic nanozyme, enriches the diversity of nanozymes, and potentially sheds light on future evolution of enzyme engineering. Nature Publishing Group UK 2022-02-11 /pmc/articles/PMC8837776/ /pubmed/35149676 http://dx.doi.org/10.1038/s41467-022-28344-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Li, Sirong
Zhou, Zijun
Tie, Zuoxiu
Wang, Bing
Ye, Meng
Du, Lei
Cui, Ran
Liu, Wei
Wan, Cuihong
Liu, Quanyi
Zhao, Sheng
Wang, Quan
Zhang, Yihong
Zhang, Shuo
Zhang, Huigang
Du, Yan
Wei, Hui
Data-informed discovery of hydrolytic nanozymes
title Data-informed discovery of hydrolytic nanozymes
title_full Data-informed discovery of hydrolytic nanozymes
title_fullStr Data-informed discovery of hydrolytic nanozymes
title_full_unstemmed Data-informed discovery of hydrolytic nanozymes
title_short Data-informed discovery of hydrolytic nanozymes
title_sort data-informed discovery of hydrolytic nanozymes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8837776/
https://www.ncbi.nlm.nih.gov/pubmed/35149676
http://dx.doi.org/10.1038/s41467-022-28344-2
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