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Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents
We use molecular dynamics to compute the free energy of carbon nanoparticles crossing a hydrophobic–hydrophilic interface. The simulations are performed on a biphasic system consisting of immiscible solvents (i.e., cyclohexane and water). We solvate a carbon nanoparticle into the cyclohexane layer a...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8837927/ https://www.ncbi.nlm.nih.gov/pubmed/35164220 http://dx.doi.org/10.3390/molecules27030956 |
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author | Gotzias, Anastasios |
author_facet | Gotzias, Anastasios |
author_sort | Gotzias, Anastasios |
collection | PubMed |
description | We use molecular dynamics to compute the free energy of carbon nanoparticles crossing a hydrophobic–hydrophilic interface. The simulations are performed on a biphasic system consisting of immiscible solvents (i.e., cyclohexane and water). We solvate a carbon nanoparticle into the cyclohexane layer and use a pull force to drive the nanoparticle into water, passing over the interface. Next, we accumulate a series of umbrella sampling simulations along the path of the nanoparticle and compute the solvation free energy with respect to the two solvents. We apply the method on three carbon nanoparticles (i.e., a carbon nanocone, a nanotube, and a graphene nanosheet). In addition, we record the water-accessible surface area of the nanoparticles during the umbrella simulations. Although we detect complete wetting of the external surface of the nanoparticles, the internal surface of the nanotube becomes partially wet, whereas that of the nanocone remains dry. This is due to the nanoconfinement of the particular nanoparticles, which shields the hydrophobic interactions encountered inside the pores. We show that cyclohexane molecules remain attached on the concave surface of the nanotube or the nanocone without being disturbed by the water molecules entering the cavity. |
format | Online Article Text |
id | pubmed-8837927 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-88379272022-02-13 Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents Gotzias, Anastasios Molecules Article We use molecular dynamics to compute the free energy of carbon nanoparticles crossing a hydrophobic–hydrophilic interface. The simulations are performed on a biphasic system consisting of immiscible solvents (i.e., cyclohexane and water). We solvate a carbon nanoparticle into the cyclohexane layer and use a pull force to drive the nanoparticle into water, passing over the interface. Next, we accumulate a series of umbrella sampling simulations along the path of the nanoparticle and compute the solvation free energy with respect to the two solvents. We apply the method on three carbon nanoparticles (i.e., a carbon nanocone, a nanotube, and a graphene nanosheet). In addition, we record the water-accessible surface area of the nanoparticles during the umbrella simulations. Although we detect complete wetting of the external surface of the nanoparticles, the internal surface of the nanotube becomes partially wet, whereas that of the nanocone remains dry. This is due to the nanoconfinement of the particular nanoparticles, which shields the hydrophobic interactions encountered inside the pores. We show that cyclohexane molecules remain attached on the concave surface of the nanotube or the nanocone without being disturbed by the water molecules entering the cavity. MDPI 2022-01-31 /pmc/articles/PMC8837927/ /pubmed/35164220 http://dx.doi.org/10.3390/molecules27030956 Text en © 2022 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Gotzias, Anastasios Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents |
title | Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents |
title_full | Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents |
title_fullStr | Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents |
title_full_unstemmed | Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents |
title_short | Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents |
title_sort | umbrella sampling simulations of carbon nanoparticles crossing immiscible solvents |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8837927/ https://www.ncbi.nlm.nih.gov/pubmed/35164220 http://dx.doi.org/10.3390/molecules27030956 |
work_keys_str_mv | AT gotziasanastasios umbrellasamplingsimulationsofcarbonnanoparticlescrossingimmisciblesolvents |