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Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents

We use molecular dynamics to compute the free energy of carbon nanoparticles crossing a hydrophobic–hydrophilic interface. The simulations are performed on a biphasic system consisting of immiscible solvents (i.e., cyclohexane and water). We solvate a carbon nanoparticle into the cyclohexane layer a...

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Autor principal: Gotzias, Anastasios
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8837927/
https://www.ncbi.nlm.nih.gov/pubmed/35164220
http://dx.doi.org/10.3390/molecules27030956
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author Gotzias, Anastasios
author_facet Gotzias, Anastasios
author_sort Gotzias, Anastasios
collection PubMed
description We use molecular dynamics to compute the free energy of carbon nanoparticles crossing a hydrophobic–hydrophilic interface. The simulations are performed on a biphasic system consisting of immiscible solvents (i.e., cyclohexane and water). We solvate a carbon nanoparticle into the cyclohexane layer and use a pull force to drive the nanoparticle into water, passing over the interface. Next, we accumulate a series of umbrella sampling simulations along the path of the nanoparticle and compute the solvation free energy with respect to the two solvents. We apply the method on three carbon nanoparticles (i.e., a carbon nanocone, a nanotube, and a graphene nanosheet). In addition, we record the water-accessible surface area of the nanoparticles during the umbrella simulations. Although we detect complete wetting of the external surface of the nanoparticles, the internal surface of the nanotube becomes partially wet, whereas that of the nanocone remains dry. This is due to the nanoconfinement of the particular nanoparticles, which shields the hydrophobic interactions encountered inside the pores. We show that cyclohexane molecules remain attached on the concave surface of the nanotube or the nanocone without being disturbed by the water molecules entering the cavity.
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spelling pubmed-88379272022-02-13 Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents Gotzias, Anastasios Molecules Article We use molecular dynamics to compute the free energy of carbon nanoparticles crossing a hydrophobic–hydrophilic interface. The simulations are performed on a biphasic system consisting of immiscible solvents (i.e., cyclohexane and water). We solvate a carbon nanoparticle into the cyclohexane layer and use a pull force to drive the nanoparticle into water, passing over the interface. Next, we accumulate a series of umbrella sampling simulations along the path of the nanoparticle and compute the solvation free energy with respect to the two solvents. We apply the method on three carbon nanoparticles (i.e., a carbon nanocone, a nanotube, and a graphene nanosheet). In addition, we record the water-accessible surface area of the nanoparticles during the umbrella simulations. Although we detect complete wetting of the external surface of the nanoparticles, the internal surface of the nanotube becomes partially wet, whereas that of the nanocone remains dry. This is due to the nanoconfinement of the particular nanoparticles, which shields the hydrophobic interactions encountered inside the pores. We show that cyclohexane molecules remain attached on the concave surface of the nanotube or the nanocone without being disturbed by the water molecules entering the cavity. MDPI 2022-01-31 /pmc/articles/PMC8837927/ /pubmed/35164220 http://dx.doi.org/10.3390/molecules27030956 Text en © 2022 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gotzias, Anastasios
Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents
title Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents
title_full Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents
title_fullStr Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents
title_full_unstemmed Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents
title_short Umbrella Sampling Simulations of Carbon Nanoparticles Crossing Immiscible Solvents
title_sort umbrella sampling simulations of carbon nanoparticles crossing immiscible solvents
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8837927/
https://www.ncbi.nlm.nih.gov/pubmed/35164220
http://dx.doi.org/10.3390/molecules27030956
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