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De Novo Transcriptome of Mammillaria bombycina (Cactaceae) under In Vitro Conditions and Identification of Glyoxalase Genes

Mammillaria bombycina is a cactus distributed in the central region of Mexico. Cactaceae have the particularity of surviving drought and high temperatures, which is why in vitro propagation studies have been carried out successfully to preserve this species and use it as a study model in cacti. In t...

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Autores principales: Enríquez-González, Carolina, Garcidueñas-Piña, Cristina, Castellanos-Hernández, Osvaldo Adrián, Enríquez-Aranda, Sergio, Loera-Muro, Abraham, Ocampo, Gilberto, Pérez-Molphe Balch, Eugenio, Morales-Domínguez, José Francisco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8838482/
https://www.ncbi.nlm.nih.gov/pubmed/35161380
http://dx.doi.org/10.3390/plants11030399
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author Enríquez-González, Carolina
Garcidueñas-Piña, Cristina
Castellanos-Hernández, Osvaldo Adrián
Enríquez-Aranda, Sergio
Loera-Muro, Abraham
Ocampo, Gilberto
Pérez-Molphe Balch, Eugenio
Morales-Domínguez, José Francisco
author_facet Enríquez-González, Carolina
Garcidueñas-Piña, Cristina
Castellanos-Hernández, Osvaldo Adrián
Enríquez-Aranda, Sergio
Loera-Muro, Abraham
Ocampo, Gilberto
Pérez-Molphe Balch, Eugenio
Morales-Domínguez, José Francisco
author_sort Enríquez-González, Carolina
collection PubMed
description Mammillaria bombycina is a cactus distributed in the central region of Mexico. Cactaceae have the particularity of surviving drought and high temperatures, which is why in vitro propagation studies have been carried out successfully to preserve this species and use it as a study model in cacti. In this contribution, a de novo transcriptome of M. bombycina was produced under in vitro conditions for the identification and expression of genes related to abiotic stress. Samples were sequenced using an Illumina platform, averaging 24 million clean readings. From assembly and annotation, 84,975 transcripts were generated, 55% of which were unigenes. Among these, the presence of 13 isoforms of genes belonging to glyoxalase I, II and III were identified. An analysis of the qRT-PCR expression of these genes was performed under in vitro and ex vitro conditions and dehydration at 6 and 24 h. The highest expression was observed under greenhouse conditions and dehydration at 24 h, according to the control. The de novo assembly of the M. bombycina transcriptome remains a study model for future work in cacti.
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spelling pubmed-88384822022-02-13 De Novo Transcriptome of Mammillaria bombycina (Cactaceae) under In Vitro Conditions and Identification of Glyoxalase Genes Enríquez-González, Carolina Garcidueñas-Piña, Cristina Castellanos-Hernández, Osvaldo Adrián Enríquez-Aranda, Sergio Loera-Muro, Abraham Ocampo, Gilberto Pérez-Molphe Balch, Eugenio Morales-Domínguez, José Francisco Plants (Basel) Article Mammillaria bombycina is a cactus distributed in the central region of Mexico. Cactaceae have the particularity of surviving drought and high temperatures, which is why in vitro propagation studies have been carried out successfully to preserve this species and use it as a study model in cacti. In this contribution, a de novo transcriptome of M. bombycina was produced under in vitro conditions for the identification and expression of genes related to abiotic stress. Samples were sequenced using an Illumina platform, averaging 24 million clean readings. From assembly and annotation, 84,975 transcripts were generated, 55% of which were unigenes. Among these, the presence of 13 isoforms of genes belonging to glyoxalase I, II and III were identified. An analysis of the qRT-PCR expression of these genes was performed under in vitro and ex vitro conditions and dehydration at 6 and 24 h. The highest expression was observed under greenhouse conditions and dehydration at 24 h, according to the control. The de novo assembly of the M. bombycina transcriptome remains a study model for future work in cacti. MDPI 2022-01-31 /pmc/articles/PMC8838482/ /pubmed/35161380 http://dx.doi.org/10.3390/plants11030399 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Enríquez-González, Carolina
Garcidueñas-Piña, Cristina
Castellanos-Hernández, Osvaldo Adrián
Enríquez-Aranda, Sergio
Loera-Muro, Abraham
Ocampo, Gilberto
Pérez-Molphe Balch, Eugenio
Morales-Domínguez, José Francisco
De Novo Transcriptome of Mammillaria bombycina (Cactaceae) under In Vitro Conditions and Identification of Glyoxalase Genes
title De Novo Transcriptome of Mammillaria bombycina (Cactaceae) under In Vitro Conditions and Identification of Glyoxalase Genes
title_full De Novo Transcriptome of Mammillaria bombycina (Cactaceae) under In Vitro Conditions and Identification of Glyoxalase Genes
title_fullStr De Novo Transcriptome of Mammillaria bombycina (Cactaceae) under In Vitro Conditions and Identification of Glyoxalase Genes
title_full_unstemmed De Novo Transcriptome of Mammillaria bombycina (Cactaceae) under In Vitro Conditions and Identification of Glyoxalase Genes
title_short De Novo Transcriptome of Mammillaria bombycina (Cactaceae) under In Vitro Conditions and Identification of Glyoxalase Genes
title_sort de novo transcriptome of mammillaria bombycina (cactaceae) under in vitro conditions and identification of glyoxalase genes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8838482/
https://www.ncbi.nlm.nih.gov/pubmed/35161380
http://dx.doi.org/10.3390/plants11030399
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