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Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability

Arginine kinase (AK) plays a crucial role in the survival of Daphnia magna, a water flea and a common planktonic invertebrate sensitive to water pollution, owing to the production of bioenergy. AK from D. magna (DmAK) has four highly conserved histidine residues, namely, H90, H227, H284, and H315 in...

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Autores principales: Kim, Da Som, Jang, Kiyoung, Kim, Wan Seo, Ryu, Moonhee, Park, Jung Hee, Kim, Yong Ju
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8839106/
https://www.ncbi.nlm.nih.gov/pubmed/35164149
http://dx.doi.org/10.3390/molecules27030884
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author Kim, Da Som
Jang, Kiyoung
Kim, Wan Seo
Ryu, Moonhee
Park, Jung Hee
Kim, Yong Ju
author_facet Kim, Da Som
Jang, Kiyoung
Kim, Wan Seo
Ryu, Moonhee
Park, Jung Hee
Kim, Yong Ju
author_sort Kim, Da Som
collection PubMed
description Arginine kinase (AK) plays a crucial role in the survival of Daphnia magna, a water flea and a common planktonic invertebrate sensitive to water pollution, owing to the production of bioenergy. AK from D. magna (DmAK) has four highly conserved histidine residues, namely, H90, H227, H284, and H315 in the amino acid sequence. In contrast to DmAK WT (wild type), the enzyme activity of the H227A mutant decreases by 18%. To identify the structure-function relationship of this H227A mutant enzyme, the crystal 3D X-ray structure has been determined and an unfolding assay using anilino-1-naphthalenesulfonic acid (ANS) fluorescence has been undertaken. The results revealed that when compared to the DmAK WT, the hydrogen bonding between H227 and A135 was broken in the H227A crystal structure. This suggests that H227 residue, closed to the arginine binding site, plays an important role in maintaining the structural stability and maximizing the enzyme activity through hydrogen bonding with the backbone oxygen of A135.
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spelling pubmed-88391062022-02-13 Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability Kim, Da Som Jang, Kiyoung Kim, Wan Seo Ryu, Moonhee Park, Jung Hee Kim, Yong Ju Molecules Article Arginine kinase (AK) plays a crucial role in the survival of Daphnia magna, a water flea and a common planktonic invertebrate sensitive to water pollution, owing to the production of bioenergy. AK from D. magna (DmAK) has four highly conserved histidine residues, namely, H90, H227, H284, and H315 in the amino acid sequence. In contrast to DmAK WT (wild type), the enzyme activity of the H227A mutant decreases by 18%. To identify the structure-function relationship of this H227A mutant enzyme, the crystal 3D X-ray structure has been determined and an unfolding assay using anilino-1-naphthalenesulfonic acid (ANS) fluorescence has been undertaken. The results revealed that when compared to the DmAK WT, the hydrogen bonding between H227 and A135 was broken in the H227A crystal structure. This suggests that H227 residue, closed to the arginine binding site, plays an important role in maintaining the structural stability and maximizing the enzyme activity through hydrogen bonding with the backbone oxygen of A135. MDPI 2022-01-28 /pmc/articles/PMC8839106/ /pubmed/35164149 http://dx.doi.org/10.3390/molecules27030884 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kim, Da Som
Jang, Kiyoung
Kim, Wan Seo
Ryu, Moonhee
Park, Jung Hee
Kim, Yong Ju
Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability
title Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability
title_full Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability
title_fullStr Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability
title_full_unstemmed Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability
title_short Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability
title_sort crystal structure of h227a mutant of arginine kinase in daphnia magna suggests the importance of its stability
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8839106/
https://www.ncbi.nlm.nih.gov/pubmed/35164149
http://dx.doi.org/10.3390/molecules27030884
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