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Simple Code Implementation for Deep Learning–Based Segmentation to Evaluate Central Serous Chorioretinopathy in Fundus Photography
PURPOSE: Central serous chorioretinopathy (CSC) is a retinal disease that frequently shows resolution and recurrence with serous detachment of the neurosensory retina. Here, we present a deep learning analysis of subretinal fluid (SRF) lesion segmentation in fundus photographs to evaluate CSC. METHO...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Association for Research in Vision and Ophthalmology
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8842634/ https://www.ncbi.nlm.nih.gov/pubmed/35147661 http://dx.doi.org/10.1167/tvst.11.2.22 |
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author | Yoo, Tae Keun Kim, Bo Yi Jeong, Hyun Kyo Kim, Hong Kyu Yang, Donghyun Ryu, Ik Hee |
author_facet | Yoo, Tae Keun Kim, Bo Yi Jeong, Hyun Kyo Kim, Hong Kyu Yang, Donghyun Ryu, Ik Hee |
author_sort | Yoo, Tae Keun |
collection | PubMed |
description | PURPOSE: Central serous chorioretinopathy (CSC) is a retinal disease that frequently shows resolution and recurrence with serous detachment of the neurosensory retina. Here, we present a deep learning analysis of subretinal fluid (SRF) lesion segmentation in fundus photographs to evaluate CSC. METHODS: We collected 194 fundus photographs of SRF lesions from the patients with CSC. Three graders manually annotated of the entire SRF area in the retinal images. The dataset was randomly separated into training (90%) and validation (10%) datasets. We used the U-Net segmentation model based on conditional generative adversarial networks (pix2pix) to detect the SRF lesions. The algorithms were trained and validated using Google Colaboratory. Researchers did not need prior knowledge of coding skills or computing resources to implement this code. RESULTS: The validation results showed that the Jaccard index and Dice coefficient scores were 0.619 and 0.763, respectively. In most cases, the segmentation results overlapped with most of the reference areas in the annotated images. However, cases with exceptional SRFs were not accurate in terms of prediction. Using Colaboratory, the proposed segmentation task ran easily in a web-based environment without setup or personal computing resources. CONCLUSIONS: The results suggest that the deep learning model based on U-Net from the pix2pix algorithm is suitable for the automatic segmentation of SRF lesions to evaluate CSC. TRANSLATIONAL RELEVANCE: Our code implementation has the potential to facilitate ophthalmology research; in particular, deep learning–based segmentation can assist in the development of pathological lesion detection solutions. |
format | Online Article Text |
id | pubmed-8842634 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Association for Research in Vision and Ophthalmology |
record_format | MEDLINE/PubMed |
spelling | pubmed-88426342022-02-18 Simple Code Implementation for Deep Learning–Based Segmentation to Evaluate Central Serous Chorioretinopathy in Fundus Photography Yoo, Tae Keun Kim, Bo Yi Jeong, Hyun Kyo Kim, Hong Kyu Yang, Donghyun Ryu, Ik Hee Transl Vis Sci Technol Data Science PURPOSE: Central serous chorioretinopathy (CSC) is a retinal disease that frequently shows resolution and recurrence with serous detachment of the neurosensory retina. Here, we present a deep learning analysis of subretinal fluid (SRF) lesion segmentation in fundus photographs to evaluate CSC. METHODS: We collected 194 fundus photographs of SRF lesions from the patients with CSC. Three graders manually annotated of the entire SRF area in the retinal images. The dataset was randomly separated into training (90%) and validation (10%) datasets. We used the U-Net segmentation model based on conditional generative adversarial networks (pix2pix) to detect the SRF lesions. The algorithms were trained and validated using Google Colaboratory. Researchers did not need prior knowledge of coding skills or computing resources to implement this code. RESULTS: The validation results showed that the Jaccard index and Dice coefficient scores were 0.619 and 0.763, respectively. In most cases, the segmentation results overlapped with most of the reference areas in the annotated images. However, cases with exceptional SRFs were not accurate in terms of prediction. Using Colaboratory, the proposed segmentation task ran easily in a web-based environment without setup or personal computing resources. CONCLUSIONS: The results suggest that the deep learning model based on U-Net from the pix2pix algorithm is suitable for the automatic segmentation of SRF lesions to evaluate CSC. TRANSLATIONAL RELEVANCE: Our code implementation has the potential to facilitate ophthalmology research; in particular, deep learning–based segmentation can assist in the development of pathological lesion detection solutions. The Association for Research in Vision and Ophthalmology 2022-02-11 /pmc/articles/PMC8842634/ /pubmed/35147661 http://dx.doi.org/10.1167/tvst.11.2.22 Text en Copyright 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. |
spellingShingle | Data Science Yoo, Tae Keun Kim, Bo Yi Jeong, Hyun Kyo Kim, Hong Kyu Yang, Donghyun Ryu, Ik Hee Simple Code Implementation for Deep Learning–Based Segmentation to Evaluate Central Serous Chorioretinopathy in Fundus Photography |
title | Simple Code Implementation for Deep Learning–Based Segmentation to Evaluate Central Serous Chorioretinopathy in Fundus Photography |
title_full | Simple Code Implementation for Deep Learning–Based Segmentation to Evaluate Central Serous Chorioretinopathy in Fundus Photography |
title_fullStr | Simple Code Implementation for Deep Learning–Based Segmentation to Evaluate Central Serous Chorioretinopathy in Fundus Photography |
title_full_unstemmed | Simple Code Implementation for Deep Learning–Based Segmentation to Evaluate Central Serous Chorioretinopathy in Fundus Photography |
title_short | Simple Code Implementation for Deep Learning–Based Segmentation to Evaluate Central Serous Chorioretinopathy in Fundus Photography |
title_sort | simple code implementation for deep learning–based segmentation to evaluate central serous chorioretinopathy in fundus photography |
topic | Data Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8842634/ https://www.ncbi.nlm.nih.gov/pubmed/35147661 http://dx.doi.org/10.1167/tvst.11.2.22 |
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