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Computer-aided COVID-19 diagnosis and a comparison of deep learners using augmented CXRs

BACKGROUND: Coronavirus Disease 2019 (COVID-19) is contagious, producing respiratory tract infection, caused by a newly discovered coronavirus. Its death toll is too high, and early diagnosis is the main problem nowadays. Infected people show a variety of symptoms such as fatigue, fever, tastelessne...

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Autores principales: Naseer, Asma, Tamoor, Maria, Azhar, Arifah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: IOS Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8842762/
https://www.ncbi.nlm.nih.gov/pubmed/34842222
http://dx.doi.org/10.3233/XST-211047
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author Naseer, Asma
Tamoor, Maria
Azhar, Arifah
author_facet Naseer, Asma
Tamoor, Maria
Azhar, Arifah
author_sort Naseer, Asma
collection PubMed
description BACKGROUND: Coronavirus Disease 2019 (COVID-19) is contagious, producing respiratory tract infection, caused by a newly discovered coronavirus. Its death toll is too high, and early diagnosis is the main problem nowadays. Infected people show a variety of symptoms such as fatigue, fever, tastelessness, dry cough, etc. Some other symptoms may also be manifested by radiographic visual identification. Therefore, Chest X-Rays (CXR) play a key role in the diagnosis of COVID-19. METHODS: In this study, we use Chest X-Rays images to develop a computer-aided diagnosis (CAD) of the disease. These images are used to train two deep networks, the Convolution Neural Network (CNN), and the Long Short-Term Memory Network (LSTM) which is an artificial Recurrent Neural Network (RNN). The proposed study involves three phases. First, the CNN model is trained on raw CXR images. Next, it is trained on pre-processed CXR images and finally enhanced CXR images are used for deep network CNN training. Geometric transformations, color transformations, image enhancement, and noise injection techniques are used for augmentation. From augmentation, we get 3,220 augmented CXRs as training datasets. In the final phase, CNN is used to extract the features of CXR imagery that are fed to the LSTM model. The performance of the four trained models is evaluated by the evaluation techniques of different models, including accuracy, specificity, sensitivity, false-positive rate, and receiver operating characteristic (ROC) curve. RESULTS: We compare our results with other benchmark CNN models. Our proposed CNN-LSTM model gives superior accuracy (99.02%) than the other state-of-the-art models. Our method to get improved input, helped the CNN model to produce a very high true positive rate (TPR 1) and no false-negative result whereas false negative was a major problem while using Raw CXR images. CONCLUSIONS: We conclude after performing different experiments that some image pre-processing and augmentation, remarkably improves the results of CNN-based models. It will help a better early detection of the disease that will eventually reduce the mortality rate of COVID.
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spelling pubmed-88427622022-03-02 Computer-aided COVID-19 diagnosis and a comparison of deep learners using augmented CXRs Naseer, Asma Tamoor, Maria Azhar, Arifah J Xray Sci Technol Research Article BACKGROUND: Coronavirus Disease 2019 (COVID-19) is contagious, producing respiratory tract infection, caused by a newly discovered coronavirus. Its death toll is too high, and early diagnosis is the main problem nowadays. Infected people show a variety of symptoms such as fatigue, fever, tastelessness, dry cough, etc. Some other symptoms may also be manifested by radiographic visual identification. Therefore, Chest X-Rays (CXR) play a key role in the diagnosis of COVID-19. METHODS: In this study, we use Chest X-Rays images to develop a computer-aided diagnosis (CAD) of the disease. These images are used to train two deep networks, the Convolution Neural Network (CNN), and the Long Short-Term Memory Network (LSTM) which is an artificial Recurrent Neural Network (RNN). The proposed study involves three phases. First, the CNN model is trained on raw CXR images. Next, it is trained on pre-processed CXR images and finally enhanced CXR images are used for deep network CNN training. Geometric transformations, color transformations, image enhancement, and noise injection techniques are used for augmentation. From augmentation, we get 3,220 augmented CXRs as training datasets. In the final phase, CNN is used to extract the features of CXR imagery that are fed to the LSTM model. The performance of the four trained models is evaluated by the evaluation techniques of different models, including accuracy, specificity, sensitivity, false-positive rate, and receiver operating characteristic (ROC) curve. RESULTS: We compare our results with other benchmark CNN models. Our proposed CNN-LSTM model gives superior accuracy (99.02%) than the other state-of-the-art models. Our method to get improved input, helped the CNN model to produce a very high true positive rate (TPR 1) and no false-negative result whereas false negative was a major problem while using Raw CXR images. CONCLUSIONS: We conclude after performing different experiments that some image pre-processing and augmentation, remarkably improves the results of CNN-based models. It will help a better early detection of the disease that will eventually reduce the mortality rate of COVID. IOS Press 2022-01-22 /pmc/articles/PMC8842762/ /pubmed/34842222 http://dx.doi.org/10.3233/XST-211047 Text en © 2022 – The authors. Published by IOS Press https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Non-Commercial (CC BY-NC 4.0) License (https://creativecommons.org/licenses/by-nc/4.0/) , which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Naseer, Asma
Tamoor, Maria
Azhar, Arifah
Computer-aided COVID-19 diagnosis and a comparison of deep learners using augmented CXRs
title Computer-aided COVID-19 diagnosis and a comparison of deep learners using augmented CXRs
title_full Computer-aided COVID-19 diagnosis and a comparison of deep learners using augmented CXRs
title_fullStr Computer-aided COVID-19 diagnosis and a comparison of deep learners using augmented CXRs
title_full_unstemmed Computer-aided COVID-19 diagnosis and a comparison of deep learners using augmented CXRs
title_short Computer-aided COVID-19 diagnosis and a comparison of deep learners using augmented CXRs
title_sort computer-aided covid-19 diagnosis and a comparison of deep learners using augmented cxrs
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8842762/
https://www.ncbi.nlm.nih.gov/pubmed/34842222
http://dx.doi.org/10.3233/XST-211047
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