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Differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling

Clinical symptoms correlate with underlying neurodegenerative changes in the vast majority of people. However, an intriguing group of individuals demonstrate neuropathologic changes consistent with Alzheimer disease (AD) yet remain cognitively normal (termed “resilient”). Previous studies have repor...

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Autores principales: Walker, Jamie M., Kazempour Dehkordi, Shiva, Fracassi, Anna, Vanschoiack, Alison, Pavenko, Anna, Taglialatela, Giulio, Woltjer, Randall, Richardson, Timothy E., Zare, Habil, Orr, Miranda E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8842950/
https://www.ncbi.nlm.nih.gov/pubmed/35164877
http://dx.doi.org/10.1186/s40478-022-01324-9
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author Walker, Jamie M.
Kazempour Dehkordi, Shiva
Fracassi, Anna
Vanschoiack, Alison
Pavenko, Anna
Taglialatela, Giulio
Woltjer, Randall
Richardson, Timothy E.
Zare, Habil
Orr, Miranda E.
author_facet Walker, Jamie M.
Kazempour Dehkordi, Shiva
Fracassi, Anna
Vanschoiack, Alison
Pavenko, Anna
Taglialatela, Giulio
Woltjer, Randall
Richardson, Timothy E.
Zare, Habil
Orr, Miranda E.
author_sort Walker, Jamie M.
collection PubMed
description Clinical symptoms correlate with underlying neurodegenerative changes in the vast majority of people. However, an intriguing group of individuals demonstrate neuropathologic changes consistent with Alzheimer disease (AD) yet remain cognitively normal (termed “resilient”). Previous studies have reported less overall neuronal loss, less gliosis, and fewer comorbidities in these individuals. Herein, NanoString GeoMx™ Digital Spatial Profiler (DSP) technology was utilized to investigate protein expression differences comparing individuals with dementia and AD neuropathologic change to resilient individuals. DSP allows for spatial analysis of protein expression in multiple regions of interest (ROIs) on formalin-fixed paraffin-embedded sections. ROIs in this analysis were hippocampal neurofibrillary tangle (NFT)-bearing neurons, non-NFT-bearing neurons, and their immediate neuronal microenvironments. Analyses of 86 proteins associated with CNS cell-typing or known neurodegenerative changes in 168 ROIs from 14 individuals identified 11 proteins displaying differential expression in NFT-bearing neurons of the resilient when compared to the demented (including APP, IDH1, CD68, GFAP, SYP and Histone H3). In addition, IDH1, CD68, and SYP were differentially expressed in the environment of NFT-bearing neurons when comparing resilient to demented. IDH1 (which is upregulated under energetic and oxidative stress) and PINK1 (which is upregulated in response to mitochondrial dysfunction and oxidative stress) both displayed lower expression in the environment of NFT-bearing neurons in the resilient. Therefore, the resilient display less evidence of energetic and oxidative stress. Synaptophysin (SYP) was increased in the resilient, which likely indicates better maintenance of synapses and synaptic connections. Furthermore, neurofilament light chain (NEFL) and ubiquitin c-terminal hydrolase (Park5) were higher in the resilient in the environment of NFTs. These differences all suggest healthier intact axons, dendrites and synapses in the resilient. In conclusion, resilient individuals display protein expression patterns suggestive of an environment containing less energetic and oxidative stress, which in turn results in maintenance of neurons and their synaptic connections. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40478-022-01324-9.
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spelling pubmed-88429502022-02-16 Differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling Walker, Jamie M. Kazempour Dehkordi, Shiva Fracassi, Anna Vanschoiack, Alison Pavenko, Anna Taglialatela, Giulio Woltjer, Randall Richardson, Timothy E. Zare, Habil Orr, Miranda E. Acta Neuropathol Commun Research Clinical symptoms correlate with underlying neurodegenerative changes in the vast majority of people. However, an intriguing group of individuals demonstrate neuropathologic changes consistent with Alzheimer disease (AD) yet remain cognitively normal (termed “resilient”). Previous studies have reported less overall neuronal loss, less gliosis, and fewer comorbidities in these individuals. Herein, NanoString GeoMx™ Digital Spatial Profiler (DSP) technology was utilized to investigate protein expression differences comparing individuals with dementia and AD neuropathologic change to resilient individuals. DSP allows for spatial analysis of protein expression in multiple regions of interest (ROIs) on formalin-fixed paraffin-embedded sections. ROIs in this analysis were hippocampal neurofibrillary tangle (NFT)-bearing neurons, non-NFT-bearing neurons, and their immediate neuronal microenvironments. Analyses of 86 proteins associated with CNS cell-typing or known neurodegenerative changes in 168 ROIs from 14 individuals identified 11 proteins displaying differential expression in NFT-bearing neurons of the resilient when compared to the demented (including APP, IDH1, CD68, GFAP, SYP and Histone H3). In addition, IDH1, CD68, and SYP were differentially expressed in the environment of NFT-bearing neurons when comparing resilient to demented. IDH1 (which is upregulated under energetic and oxidative stress) and PINK1 (which is upregulated in response to mitochondrial dysfunction and oxidative stress) both displayed lower expression in the environment of NFT-bearing neurons in the resilient. Therefore, the resilient display less evidence of energetic and oxidative stress. Synaptophysin (SYP) was increased in the resilient, which likely indicates better maintenance of synapses and synaptic connections. Furthermore, neurofilament light chain (NEFL) and ubiquitin c-terminal hydrolase (Park5) were higher in the resilient in the environment of NFTs. These differences all suggest healthier intact axons, dendrites and synapses in the resilient. In conclusion, resilient individuals display protein expression patterns suggestive of an environment containing less energetic and oxidative stress, which in turn results in maintenance of neurons and their synaptic connections. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40478-022-01324-9. BioMed Central 2022-02-14 /pmc/articles/PMC8842950/ /pubmed/35164877 http://dx.doi.org/10.1186/s40478-022-01324-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Walker, Jamie M.
Kazempour Dehkordi, Shiva
Fracassi, Anna
Vanschoiack, Alison
Pavenko, Anna
Taglialatela, Giulio
Woltjer, Randall
Richardson, Timothy E.
Zare, Habil
Orr, Miranda E.
Differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling
title Differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling
title_full Differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling
title_fullStr Differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling
title_full_unstemmed Differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling
title_short Differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling
title_sort differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8842950/
https://www.ncbi.nlm.nih.gov/pubmed/35164877
http://dx.doi.org/10.1186/s40478-022-01324-9
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