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Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea
Thalassiosira nordenskioeldii is a common harmful algal bloom (HAB) species with worldwide distribution. Although barcode sequences of this ecologically important species have been published, no genome data have been published for T. nordenskioeldii. In this study, we constructed the complete mitoch...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843120/ https://www.ncbi.nlm.nih.gov/pubmed/35174284 http://dx.doi.org/10.1080/23802359.2021.1911715 |
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author | Liu, Kuiyan Liu, Shuya Chen, Yang Liu, Feng Chen, Nansheng |
author_facet | Liu, Kuiyan Liu, Shuya Chen, Yang Liu, Feng Chen, Nansheng |
author_sort | Liu, Kuiyan |
collection | PubMed |
description | Thalassiosira nordenskioeldii is a common harmful algal bloom (HAB) species with worldwide distribution. Although barcode sequences of this ecologically important species have been published, no genome data have been published for T. nordenskioeldii. In this study, we constructed the complete mitochondrial genome (mtDNA) of a T. nordenskioeldii strain isolated from the East China Sea. The T. nordenskioeldii mtDNA is circular and has a length of 47,038 bp and a GC content of 30.84%. The mtDNA encodes 69 genes, including 40 protein-coding (PCGs), 27 tRNA and two rRNA genes. Phylogenetic analysis using concatenated amino acid sequences of 31 shared PCGs from 37 diatom mtDNAs revealed that the mtDNA of T. nordenskioeldii was fully resolved in a clade with that of Thalassiosira profunda. The mtDNA of T. nordenskioeldii showed high collinearity with those of T. profunda and Skeletonema marinoi with only minor rearrangements. The completion of Thalassiosira mtDNAs will facilitate evolutionary studies on species of the order Thalassiosirales and the class Mediophyceae. |
format | Online Article Text |
id | pubmed-8843120 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88431202022-02-15 Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea Liu, Kuiyan Liu, Shuya Chen, Yang Liu, Feng Chen, Nansheng Mitochondrial DNA B Resour Mitogenome Announcement Thalassiosira nordenskioeldii is a common harmful algal bloom (HAB) species with worldwide distribution. Although barcode sequences of this ecologically important species have been published, no genome data have been published for T. nordenskioeldii. In this study, we constructed the complete mitochondrial genome (mtDNA) of a T. nordenskioeldii strain isolated from the East China Sea. The T. nordenskioeldii mtDNA is circular and has a length of 47,038 bp and a GC content of 30.84%. The mtDNA encodes 69 genes, including 40 protein-coding (PCGs), 27 tRNA and two rRNA genes. Phylogenetic analysis using concatenated amino acid sequences of 31 shared PCGs from 37 diatom mtDNAs revealed that the mtDNA of T. nordenskioeldii was fully resolved in a clade with that of Thalassiosira profunda. The mtDNA of T. nordenskioeldii showed high collinearity with those of T. profunda and Skeletonema marinoi with only minor rearrangements. The completion of Thalassiosira mtDNAs will facilitate evolutionary studies on species of the order Thalassiosirales and the class Mediophyceae. Taylor & Francis 2021-04-15 /pmc/articles/PMC8843120/ /pubmed/35174284 http://dx.doi.org/10.1080/23802359.2021.1911715 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Liu, Kuiyan Liu, Shuya Chen, Yang Liu, Feng Chen, Nansheng Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea |
title | Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea |
title_full | Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea |
title_fullStr | Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea |
title_full_unstemmed | Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea |
title_short | Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea |
title_sort | complete mitochondrial genome of the harmful algal bloom species thalassiosira nordenskioeldii (mediophyceae, bacillariophyta) from the east china sea |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843120/ https://www.ncbi.nlm.nih.gov/pubmed/35174284 http://dx.doi.org/10.1080/23802359.2021.1911715 |
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