Cargando…

Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet

Glyptothorax annandalei belongs to the family of Sisoridae, Glyptothorax. It is distributed in the Yarlung Zangbo River of southwestern China. In this study, we first published the complete mitochondrial genome sequence of Glyptothorax annandalei, which was 16,541 bp in length. This genome consists...

Descripción completa

Detalles Bibliográficos
Autores principales: Lin, Xiaowan, Li, Lei, Jin, Hongyu, Jin, Xing, Ma, Bo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843123/
https://www.ncbi.nlm.nih.gov/pubmed/35174282
http://dx.doi.org/10.1080/23802359.2021.1911701
_version_ 1784651185827872768
author Lin, Xiaowan
Li, Lei
Jin, Hongyu
Jin, Xing
Ma, Bo
author_facet Lin, Xiaowan
Li, Lei
Jin, Hongyu
Jin, Xing
Ma, Bo
author_sort Lin, Xiaowan
collection PubMed
description Glyptothorax annandalei belongs to the family of Sisoridae, Glyptothorax. It is distributed in the Yarlung Zangbo River of southwestern China. In this study, we first published the complete mitochondrial genome sequence of Glyptothorax annandalei, which was 16,541 bp in length. This genome consists of two rRNA genes, 22 tRNA genes, 13 protein-coding genes (PCGs), and a putative control region. The overall base composition was for A(31.25%,) for T(25.67%), for C(27.66%), for G(15.42%). The PCGs start with a traditional ATG except for COX1 start with GTG, respectively, and end with stop codon TAA, TAG, or a single T base. All tRNA have the typical clover-leaf structure. The phylogenetic tree of the whole mitogenome sequence is constructed by maximum likelihood (ML) method and the phylogenetic relationship among the family Sisoridae is further analyzed. We expect to provide the theoretical basis for the further study of the phylogenetic relationship, taxonomic status, conservation and management of genetic resources of Sisoridae catfishes.
format Online
Article
Text
id pubmed-8843123
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-88431232022-02-15 Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet Lin, Xiaowan Li, Lei Jin, Hongyu Jin, Xing Ma, Bo Mitochondrial DNA B Resour Mitogenome Announcement Glyptothorax annandalei belongs to the family of Sisoridae, Glyptothorax. It is distributed in the Yarlung Zangbo River of southwestern China. In this study, we first published the complete mitochondrial genome sequence of Glyptothorax annandalei, which was 16,541 bp in length. This genome consists of two rRNA genes, 22 tRNA genes, 13 protein-coding genes (PCGs), and a putative control region. The overall base composition was for A(31.25%,) for T(25.67%), for C(27.66%), for G(15.42%). The PCGs start with a traditional ATG except for COX1 start with GTG, respectively, and end with stop codon TAA, TAG, or a single T base. All tRNA have the typical clover-leaf structure. The phylogenetic tree of the whole mitogenome sequence is constructed by maximum likelihood (ML) method and the phylogenetic relationship among the family Sisoridae is further analyzed. We expect to provide the theoretical basis for the further study of the phylogenetic relationship, taxonomic status, conservation and management of genetic resources of Sisoridae catfishes. Taylor & Francis 2021-04-15 /pmc/articles/PMC8843123/ /pubmed/35174282 http://dx.doi.org/10.1080/23802359.2021.1911701 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lin, Xiaowan
Li, Lei
Jin, Hongyu
Jin, Xing
Ma, Bo
Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet
title Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet
title_full Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet
title_fullStr Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet
title_full_unstemmed Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet
title_short Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet
title_sort complete mitochondrial genome sequence of glyptothorax annandalei in the yarlung zangbo river, tibet
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843123/
https://www.ncbi.nlm.nih.gov/pubmed/35174282
http://dx.doi.org/10.1080/23802359.2021.1911701
work_keys_str_mv AT linxiaowan completemitochondrialgenomesequenceofglyptothoraxannandaleiintheyarlungzangborivertibet
AT lilei completemitochondrialgenomesequenceofglyptothoraxannandaleiintheyarlungzangborivertibet
AT jinhongyu completemitochondrialgenomesequenceofglyptothoraxannandaleiintheyarlungzangborivertibet
AT jinxing completemitochondrialgenomesequenceofglyptothoraxannandaleiintheyarlungzangborivertibet
AT mabo completemitochondrialgenomesequenceofglyptothoraxannandaleiintheyarlungzangborivertibet