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Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet
Glyptothorax annandalei belongs to the family of Sisoridae, Glyptothorax. It is distributed in the Yarlung Zangbo River of southwestern China. In this study, we first published the complete mitochondrial genome sequence of Glyptothorax annandalei, which was 16,541 bp in length. This genome consists...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843123/ https://www.ncbi.nlm.nih.gov/pubmed/35174282 http://dx.doi.org/10.1080/23802359.2021.1911701 |
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author | Lin, Xiaowan Li, Lei Jin, Hongyu Jin, Xing Ma, Bo |
author_facet | Lin, Xiaowan Li, Lei Jin, Hongyu Jin, Xing Ma, Bo |
author_sort | Lin, Xiaowan |
collection | PubMed |
description | Glyptothorax annandalei belongs to the family of Sisoridae, Glyptothorax. It is distributed in the Yarlung Zangbo River of southwestern China. In this study, we first published the complete mitochondrial genome sequence of Glyptothorax annandalei, which was 16,541 bp in length. This genome consists of two rRNA genes, 22 tRNA genes, 13 protein-coding genes (PCGs), and a putative control region. The overall base composition was for A(31.25%,) for T(25.67%), for C(27.66%), for G(15.42%). The PCGs start with a traditional ATG except for COX1 start with GTG, respectively, and end with stop codon TAA, TAG, or a single T base. All tRNA have the typical clover-leaf structure. The phylogenetic tree of the whole mitogenome sequence is constructed by maximum likelihood (ML) method and the phylogenetic relationship among the family Sisoridae is further analyzed. We expect to provide the theoretical basis for the further study of the phylogenetic relationship, taxonomic status, conservation and management of genetic resources of Sisoridae catfishes. |
format | Online Article Text |
id | pubmed-8843123 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88431232022-02-15 Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet Lin, Xiaowan Li, Lei Jin, Hongyu Jin, Xing Ma, Bo Mitochondrial DNA B Resour Mitogenome Announcement Glyptothorax annandalei belongs to the family of Sisoridae, Glyptothorax. It is distributed in the Yarlung Zangbo River of southwestern China. In this study, we first published the complete mitochondrial genome sequence of Glyptothorax annandalei, which was 16,541 bp in length. This genome consists of two rRNA genes, 22 tRNA genes, 13 protein-coding genes (PCGs), and a putative control region. The overall base composition was for A(31.25%,) for T(25.67%), for C(27.66%), for G(15.42%). The PCGs start with a traditional ATG except for COX1 start with GTG, respectively, and end with stop codon TAA, TAG, or a single T base. All tRNA have the typical clover-leaf structure. The phylogenetic tree of the whole mitogenome sequence is constructed by maximum likelihood (ML) method and the phylogenetic relationship among the family Sisoridae is further analyzed. We expect to provide the theoretical basis for the further study of the phylogenetic relationship, taxonomic status, conservation and management of genetic resources of Sisoridae catfishes. Taylor & Francis 2021-04-15 /pmc/articles/PMC8843123/ /pubmed/35174282 http://dx.doi.org/10.1080/23802359.2021.1911701 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Lin, Xiaowan Li, Lei Jin, Hongyu Jin, Xing Ma, Bo Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet |
title | Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet |
title_full | Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet |
title_fullStr | Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet |
title_full_unstemmed | Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet |
title_short | Complete mitochondrial genome sequence of Glyptothorax annandalei in the Yarlung Zangbo River, Tibet |
title_sort | complete mitochondrial genome sequence of glyptothorax annandalei in the yarlung zangbo river, tibet |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843123/ https://www.ncbi.nlm.nih.gov/pubmed/35174282 http://dx.doi.org/10.1080/23802359.2021.1911701 |
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