Cargando…
Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan
The east Asian catfish Silurus asotus is a common species living in fresh water in Japan. The complete mitochondrial genome of the S. asotus from Lake Biwa in Japan was analyzed using next-generation sequencing. The mitochondrial genome of S. asotus was identified as a 16,515 bp circular molecule co...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843203/ https://www.ncbi.nlm.nih.gov/pubmed/35174289 http://dx.doi.org/10.1080/23802359.2022.2034546 |
_version_ | 1784651204850089984 |
---|---|
author | Kishimoto, Yuu Okuyama, Hisashi Takahashi, Jun-ichi |
author_facet | Kishimoto, Yuu Okuyama, Hisashi Takahashi, Jun-ichi |
author_sort | Kishimoto, Yuu |
collection | PubMed |
description | The east Asian catfish Silurus asotus is a common species living in fresh water in Japan. The complete mitochondrial genome of the S. asotus from Lake Biwa in Japan was analyzed using next-generation sequencing. The mitochondrial genome of S. asotus was identified as a 16,515 bp circular molecule containing 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes, along with one A + T-rich control region. The AT content was 56.1%. Start codons ATG and GTG were found in 13 PCGs. Stop codons TAA, TAG, and AGA were observed in 13 PCGs. The heavy (H)-strand was predicted to have 12 PCGs and 14 tRNA and two rRNA genes, while the light (L)-strand was predicted to contain one PCGs and eight tRNA genes. The molecular phylogenetic analysis showed that S. asotus from Lake Biwa is genetically similar to S. asotus from China. |
format | Online Article Text |
id | pubmed-8843203 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88432032022-02-15 Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan Kishimoto, Yuu Okuyama, Hisashi Takahashi, Jun-ichi Mitochondrial DNA B Resour Mitogenome Announcement The east Asian catfish Silurus asotus is a common species living in fresh water in Japan. The complete mitochondrial genome of the S. asotus from Lake Biwa in Japan was analyzed using next-generation sequencing. The mitochondrial genome of S. asotus was identified as a 16,515 bp circular molecule containing 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes, along with one A + T-rich control region. The AT content was 56.1%. Start codons ATG and GTG were found in 13 PCGs. Stop codons TAA, TAG, and AGA were observed in 13 PCGs. The heavy (H)-strand was predicted to have 12 PCGs and 14 tRNA and two rRNA genes, while the light (L)-strand was predicted to contain one PCGs and eight tRNA genes. The molecular phylogenetic analysis showed that S. asotus from Lake Biwa is genetically similar to S. asotus from China. Taylor & Francis 2022-02-07 /pmc/articles/PMC8843203/ /pubmed/35174289 http://dx.doi.org/10.1080/23802359.2022.2034546 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Kishimoto, Yuu Okuyama, Hisashi Takahashi, Jun-ichi Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan |
title | Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan |
title_full | Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan |
title_fullStr | Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan |
title_full_unstemmed | Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan |
title_short | Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan |
title_sort | complete mitochondrial dna sequence of the eastern asian catfish silurus asotus (siluriformes: siluridae) from lake biwa in japan |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843203/ https://www.ncbi.nlm.nih.gov/pubmed/35174289 http://dx.doi.org/10.1080/23802359.2022.2034546 |
work_keys_str_mv | AT kishimotoyuu completemitochondrialdnasequenceoftheeasternasiancatfishsilurusasotussiluriformessiluridaefromlakebiwainjapan AT okuyamahisashi completemitochondrialdnasequenceoftheeasternasiancatfishsilurusasotussiluriformessiluridaefromlakebiwainjapan AT takahashijunichi completemitochondrialdnasequenceoftheeasternasiancatfishsilurusasotussiluriformessiluridaefromlakebiwainjapan |