Cargando…

Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan

The east Asian catfish Silurus asotus is a common species living in fresh water in Japan. The complete mitochondrial genome of the S. asotus from Lake Biwa in Japan was analyzed using next-generation sequencing. The mitochondrial genome of S. asotus was identified as a 16,515 bp circular molecule co...

Descripción completa

Detalles Bibliográficos
Autores principales: Kishimoto, Yuu, Okuyama, Hisashi, Takahashi, Jun-ichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843203/
https://www.ncbi.nlm.nih.gov/pubmed/35174289
http://dx.doi.org/10.1080/23802359.2022.2034546
_version_ 1784651204850089984
author Kishimoto, Yuu
Okuyama, Hisashi
Takahashi, Jun-ichi
author_facet Kishimoto, Yuu
Okuyama, Hisashi
Takahashi, Jun-ichi
author_sort Kishimoto, Yuu
collection PubMed
description The east Asian catfish Silurus asotus is a common species living in fresh water in Japan. The complete mitochondrial genome of the S. asotus from Lake Biwa in Japan was analyzed using next-generation sequencing. The mitochondrial genome of S. asotus was identified as a 16,515 bp circular molecule containing 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes, along with one A + T-rich control region. The AT content was 56.1%. Start codons ATG and GTG were found in 13 PCGs. Stop codons TAA, TAG, and AGA were observed in 13 PCGs. The heavy (H)-strand was predicted to have 12 PCGs and 14 tRNA and two rRNA genes, while the light (L)-strand was predicted to contain one PCGs and eight tRNA genes. The molecular phylogenetic analysis showed that S. asotus from Lake Biwa is genetically similar to S. asotus from China.
format Online
Article
Text
id pubmed-8843203
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-88432032022-02-15 Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan Kishimoto, Yuu Okuyama, Hisashi Takahashi, Jun-ichi Mitochondrial DNA B Resour Mitogenome Announcement The east Asian catfish Silurus asotus is a common species living in fresh water in Japan. The complete mitochondrial genome of the S. asotus from Lake Biwa in Japan was analyzed using next-generation sequencing. The mitochondrial genome of S. asotus was identified as a 16,515 bp circular molecule containing 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes, along with one A + T-rich control region. The AT content was 56.1%. Start codons ATG and GTG were found in 13 PCGs. Stop codons TAA, TAG, and AGA were observed in 13 PCGs. The heavy (H)-strand was predicted to have 12 PCGs and 14 tRNA and two rRNA genes, while the light (L)-strand was predicted to contain one PCGs and eight tRNA genes. The molecular phylogenetic analysis showed that S. asotus from Lake Biwa is genetically similar to S. asotus from China. Taylor & Francis 2022-02-07 /pmc/articles/PMC8843203/ /pubmed/35174289 http://dx.doi.org/10.1080/23802359.2022.2034546 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Kishimoto, Yuu
Okuyama, Hisashi
Takahashi, Jun-ichi
Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan
title Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan
title_full Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan
title_fullStr Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan
title_full_unstemmed Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan
title_short Complete mitochondrial DNA sequence of the Eastern Asian catfish Silurus asotus (Siluriformes: Siluridae) from Lake Biwa in Japan
title_sort complete mitochondrial dna sequence of the eastern asian catfish silurus asotus (siluriformes: siluridae) from lake biwa in japan
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8843203/
https://www.ncbi.nlm.nih.gov/pubmed/35174289
http://dx.doi.org/10.1080/23802359.2022.2034546
work_keys_str_mv AT kishimotoyuu completemitochondrialdnasequenceoftheeasternasiancatfishsilurusasotussiluriformessiluridaefromlakebiwainjapan
AT okuyamahisashi completemitochondrialdnasequenceoftheeasternasiancatfishsilurusasotussiluriformessiluridaefromlakebiwainjapan
AT takahashijunichi completemitochondrialdnasequenceoftheeasternasiancatfishsilurusasotussiluriformessiluridaefromlakebiwainjapan