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Predictive classification of Alzheimer’s disease using brain imaging and genetic data

For now, Alzheimer’s disease (AD) is incurable. But if it can be diagnosed early, the correct treatment can be used to delay the disease. Most of the existing research methods use single or multi-modal imaging features for prediction, relatively few studies combine brain imaging with genetic feature...

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Autores principales: Sheng, Jinhua, Xin, Yu, Zhang, Qiao, Wang, Luyun, Yang, Ze, Yin, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8844076/
https://www.ncbi.nlm.nih.gov/pubmed/35165327
http://dx.doi.org/10.1038/s41598-022-06444-9
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author Sheng, Jinhua
Xin, Yu
Zhang, Qiao
Wang, Luyun
Yang, Ze
Yin, Jie
author_facet Sheng, Jinhua
Xin, Yu
Zhang, Qiao
Wang, Luyun
Yang, Ze
Yin, Jie
author_sort Sheng, Jinhua
collection PubMed
description For now, Alzheimer’s disease (AD) is incurable. But if it can be diagnosed early, the correct treatment can be used to delay the disease. Most of the existing research methods use single or multi-modal imaging features for prediction, relatively few studies combine brain imaging with genetic features for disease diagnosis. In order to accurately identify AD, healthy control (HC) and the two stages of mild cognitive impairment (MCI: early MCI, late MCI) combined with brain imaging and genetic characteristics, we proposed an integrated Fisher score and multi-modal multi-task feature selection research method. We learned first genetic features with Fisher score to perform dimensionality reduction in order to solve the problem of the large difference between the feature scales of genetic and brain imaging. Then we learned the potential related features of brain imaging and genetic data, and multiplied the selected features with the learned weight coefficients. Through the feature selection program, five imaging and five genetic features were selected to achieve an average classification accuracy of 98% for HC and AD, 82% for HC and EMCI, 86% for HC and LMCI, 80% for EMCI and LMCI, 88% for EMCI and AD, and 72% for LMCI and AD. Compared with only using imaging features, the classification accuracy has been improved to a certain extent, and a set of interrelated features of brain imaging phenotypes and genetic factors were selected.
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spelling pubmed-88440762022-02-16 Predictive classification of Alzheimer’s disease using brain imaging and genetic data Sheng, Jinhua Xin, Yu Zhang, Qiao Wang, Luyun Yang, Ze Yin, Jie Sci Rep Article For now, Alzheimer’s disease (AD) is incurable. But if it can be diagnosed early, the correct treatment can be used to delay the disease. Most of the existing research methods use single or multi-modal imaging features for prediction, relatively few studies combine brain imaging with genetic features for disease diagnosis. In order to accurately identify AD, healthy control (HC) and the two stages of mild cognitive impairment (MCI: early MCI, late MCI) combined with brain imaging and genetic characteristics, we proposed an integrated Fisher score and multi-modal multi-task feature selection research method. We learned first genetic features with Fisher score to perform dimensionality reduction in order to solve the problem of the large difference between the feature scales of genetic and brain imaging. Then we learned the potential related features of brain imaging and genetic data, and multiplied the selected features with the learned weight coefficients. Through the feature selection program, five imaging and five genetic features were selected to achieve an average classification accuracy of 98% for HC and AD, 82% for HC and EMCI, 86% for HC and LMCI, 80% for EMCI and LMCI, 88% for EMCI and AD, and 72% for LMCI and AD. Compared with only using imaging features, the classification accuracy has been improved to a certain extent, and a set of interrelated features of brain imaging phenotypes and genetic factors were selected. Nature Publishing Group UK 2022-02-14 /pmc/articles/PMC8844076/ /pubmed/35165327 http://dx.doi.org/10.1038/s41598-022-06444-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sheng, Jinhua
Xin, Yu
Zhang, Qiao
Wang, Luyun
Yang, Ze
Yin, Jie
Predictive classification of Alzheimer’s disease using brain imaging and genetic data
title Predictive classification of Alzheimer’s disease using brain imaging and genetic data
title_full Predictive classification of Alzheimer’s disease using brain imaging and genetic data
title_fullStr Predictive classification of Alzheimer’s disease using brain imaging and genetic data
title_full_unstemmed Predictive classification of Alzheimer’s disease using brain imaging and genetic data
title_short Predictive classification of Alzheimer’s disease using brain imaging and genetic data
title_sort predictive classification of alzheimer’s disease using brain imaging and genetic data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8844076/
https://www.ncbi.nlm.nih.gov/pubmed/35165327
http://dx.doi.org/10.1038/s41598-022-06444-9
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