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Genome-Wide Identification and Characterization of GASA Gene Family in Nicotiana tabacum
The gibberellic acid stimulated Arabidopsis (GASA) gene family is critical for plant growth, development, and stress response. GASA gene family has been studied in various plant species, however, the GASA gene family in tobacco (Nicotiana tabacum) have not been characterized in detail. In this study...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8844377/ https://www.ncbi.nlm.nih.gov/pubmed/35178069 http://dx.doi.org/10.3389/fgene.2021.768942 |
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author | Li, Zhaowu Gao, Junping Wang, Genhong Wang, Shuaibin Chen, Kai Pu, Wenxuan Wang, Yaofu Xia, Qingyou Fan, Xiaorong |
author_facet | Li, Zhaowu Gao, Junping Wang, Genhong Wang, Shuaibin Chen, Kai Pu, Wenxuan Wang, Yaofu Xia, Qingyou Fan, Xiaorong |
author_sort | Li, Zhaowu |
collection | PubMed |
description | The gibberellic acid stimulated Arabidopsis (GASA) gene family is critical for plant growth, development, and stress response. GASA gene family has been studied in various plant species, however, the GASA gene family in tobacco (Nicotiana tabacum) have not been characterized in detail. In this study, we identified 18 GASA genes in the tobacco genome, which were distributed to 13 chromosomes. All the proteins contained a conserved GASA domain and highly specific 12-cysteine residues at the C-terminus. Phylogenetic analysis divided the NtGASA genes into three well-conserved subfamilies. Synteny analysis suggested that tandem and segmental duplications played an important role in the expansion of the NtGASA gene family. Cis-elements analysis showed that NtGASA genes might influence different phytohormone and stress responses. Tissue expression analysis revealed that NtGASA genes displayed unique or distinct expression patterns in different tissues, suggesting their potential roles in plant growth and development. We also found that the expression of NtGASA genes were mostly regulated by abscisic and gibberellic acid, signifying their roles in the two phytohormone signaling pathways. Overall, these findings improve our understanding of NtGASA genes and provided useful information for further studies on their molecular functions. |
format | Online Article Text |
id | pubmed-8844377 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88443772022-02-16 Genome-Wide Identification and Characterization of GASA Gene Family in Nicotiana tabacum Li, Zhaowu Gao, Junping Wang, Genhong Wang, Shuaibin Chen, Kai Pu, Wenxuan Wang, Yaofu Xia, Qingyou Fan, Xiaorong Front Genet Genetics The gibberellic acid stimulated Arabidopsis (GASA) gene family is critical for plant growth, development, and stress response. GASA gene family has been studied in various plant species, however, the GASA gene family in tobacco (Nicotiana tabacum) have not been characterized in detail. In this study, we identified 18 GASA genes in the tobacco genome, which were distributed to 13 chromosomes. All the proteins contained a conserved GASA domain and highly specific 12-cysteine residues at the C-terminus. Phylogenetic analysis divided the NtGASA genes into three well-conserved subfamilies. Synteny analysis suggested that tandem and segmental duplications played an important role in the expansion of the NtGASA gene family. Cis-elements analysis showed that NtGASA genes might influence different phytohormone and stress responses. Tissue expression analysis revealed that NtGASA genes displayed unique or distinct expression patterns in different tissues, suggesting their potential roles in plant growth and development. We also found that the expression of NtGASA genes were mostly regulated by abscisic and gibberellic acid, signifying their roles in the two phytohormone signaling pathways. Overall, these findings improve our understanding of NtGASA genes and provided useful information for further studies on their molecular functions. Frontiers Media S.A. 2022-02-01 /pmc/articles/PMC8844377/ /pubmed/35178069 http://dx.doi.org/10.3389/fgene.2021.768942 Text en Copyright © 2022 Li, Gao, Wang, Wang, Chen, Pu, Wang, Xia and Fan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Li, Zhaowu Gao, Junping Wang, Genhong Wang, Shuaibin Chen, Kai Pu, Wenxuan Wang, Yaofu Xia, Qingyou Fan, Xiaorong Genome-Wide Identification and Characterization of GASA Gene Family in Nicotiana tabacum |
title | Genome-Wide Identification and Characterization of GASA Gene Family in Nicotiana tabacum
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title_full | Genome-Wide Identification and Characterization of GASA Gene Family in Nicotiana tabacum
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title_fullStr | Genome-Wide Identification and Characterization of GASA Gene Family in Nicotiana tabacum
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title_full_unstemmed | Genome-Wide Identification and Characterization of GASA Gene Family in Nicotiana tabacum
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title_short | Genome-Wide Identification and Characterization of GASA Gene Family in Nicotiana tabacum
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title_sort | genome-wide identification and characterization of gasa gene family in nicotiana tabacum |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8844377/ https://www.ncbi.nlm.nih.gov/pubmed/35178069 http://dx.doi.org/10.3389/fgene.2021.768942 |
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