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Regulatory patterns analysis of transcription factor binding site clustered regions and identification of key genes in endometrial cancer
Endometrial cancer (EC) is one of the three fatal tumors of the female reproductive system. Epigenetic alterations have been reported to be important in tumorigenesis, especially the chromatin accessibility changes and transcription factor binding differences. However, the regulatory mechanism under...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8844752/ https://www.ncbi.nlm.nih.gov/pubmed/35222842 http://dx.doi.org/10.1016/j.csbj.2022.01.014 |
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author | Tang, Xiaohan Wang, Junting Tao, Huan Yuan, Lin Du, Guifang Ding, Yang Xu, Kang Bai, Xuemei Li, Yaru Sun, Yu Huang, Xin Zheng, Xiushuang Li, Qianqian Gong, Bowen Zheng, Yang Xu, Jingxuan Xu, Xiang Wang, Zhe Bo, Xiaochen Lu, Meisong Li, Hao Chen, Hebing |
author_facet | Tang, Xiaohan Wang, Junting Tao, Huan Yuan, Lin Du, Guifang Ding, Yang Xu, Kang Bai, Xuemei Li, Yaru Sun, Yu Huang, Xin Zheng, Xiushuang Li, Qianqian Gong, Bowen Zheng, Yang Xu, Jingxuan Xu, Xiang Wang, Zhe Bo, Xiaochen Lu, Meisong Li, Hao Chen, Hebing |
author_sort | Tang, Xiaohan |
collection | PubMed |
description | Endometrial cancer (EC) is one of the three fatal tumors of the female reproductive system. Epigenetic alterations have been reported to be important in tumorigenesis, especially the chromatin accessibility changes and transcription factor binding differences. However, the regulatory mechanism underlying epigenetic alterations in EC development remains unclear. Here, we identified and characterized transcription factor binding site clustered regions (TFCRs) by integrating chromatin accessibility and transcription factor binding information. We totally identified 78,820 TFCRs and explored the relationship between TFCRs and regulatory elements, gene expression and mutation. Finally, we constructed a bioinformatic framework to identify candidate oncogenes and screened 13 candidate key genes, which may serve as potential diagnostic markers or therapeutic targets of EC. |
format | Online Article Text |
id | pubmed-8844752 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-88447522022-02-25 Regulatory patterns analysis of transcription factor binding site clustered regions and identification of key genes in endometrial cancer Tang, Xiaohan Wang, Junting Tao, Huan Yuan, Lin Du, Guifang Ding, Yang Xu, Kang Bai, Xuemei Li, Yaru Sun, Yu Huang, Xin Zheng, Xiushuang Li, Qianqian Gong, Bowen Zheng, Yang Xu, Jingxuan Xu, Xiang Wang, Zhe Bo, Xiaochen Lu, Meisong Li, Hao Chen, Hebing Comput Struct Biotechnol J Research Article Endometrial cancer (EC) is one of the three fatal tumors of the female reproductive system. Epigenetic alterations have been reported to be important in tumorigenesis, especially the chromatin accessibility changes and transcription factor binding differences. However, the regulatory mechanism underlying epigenetic alterations in EC development remains unclear. Here, we identified and characterized transcription factor binding site clustered regions (TFCRs) by integrating chromatin accessibility and transcription factor binding information. We totally identified 78,820 TFCRs and explored the relationship between TFCRs and regulatory elements, gene expression and mutation. Finally, we constructed a bioinformatic framework to identify candidate oncogenes and screened 13 candidate key genes, which may serve as potential diagnostic markers or therapeutic targets of EC. Research Network of Computational and Structural Biotechnology 2022-01-20 /pmc/articles/PMC8844752/ /pubmed/35222842 http://dx.doi.org/10.1016/j.csbj.2022.01.014 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Tang, Xiaohan Wang, Junting Tao, Huan Yuan, Lin Du, Guifang Ding, Yang Xu, Kang Bai, Xuemei Li, Yaru Sun, Yu Huang, Xin Zheng, Xiushuang Li, Qianqian Gong, Bowen Zheng, Yang Xu, Jingxuan Xu, Xiang Wang, Zhe Bo, Xiaochen Lu, Meisong Li, Hao Chen, Hebing Regulatory patterns analysis of transcription factor binding site clustered regions and identification of key genes in endometrial cancer |
title | Regulatory patterns analysis of transcription factor binding site clustered regions and identification of key genes in endometrial cancer |
title_full | Regulatory patterns analysis of transcription factor binding site clustered regions and identification of key genes in endometrial cancer |
title_fullStr | Regulatory patterns analysis of transcription factor binding site clustered regions and identification of key genes in endometrial cancer |
title_full_unstemmed | Regulatory patterns analysis of transcription factor binding site clustered regions and identification of key genes in endometrial cancer |
title_short | Regulatory patterns analysis of transcription factor binding site clustered regions and identification of key genes in endometrial cancer |
title_sort | regulatory patterns analysis of transcription factor binding site clustered regions and identification of key genes in endometrial cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8844752/ https://www.ncbi.nlm.nih.gov/pubmed/35222842 http://dx.doi.org/10.1016/j.csbj.2022.01.014 |
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