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SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models

The success of correctly identifying all the components of a nonlinear mixed‐effects model is far from straightforward: it is a question of finding the best structural model, determining the type of relationship between covariates and individual parameters, detecting possible correlations between ra...

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Detalles Bibliográficos
Autores principales: Prague, Mélanie, Lavielle, Marc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8846636/
https://www.ncbi.nlm.nih.gov/pubmed/35104058
http://dx.doi.org/10.1002/psp4.12742
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author Prague, Mélanie
Lavielle, Marc
author_facet Prague, Mélanie
Lavielle, Marc
author_sort Prague, Mélanie
collection PubMed
description The success of correctly identifying all the components of a nonlinear mixed‐effects model is far from straightforward: it is a question of finding the best structural model, determining the type of relationship between covariates and individual parameters, detecting possible correlations between random effects, or also modeling residual errors. We present the Stochastic Approximation for Model Building Algorithm (SAMBA) procedure and show how this algorithm can be used to speed up this process of model building by identifying at each step how best to improve some of the model components. The principle of this algorithm basically consists in “learning something” about the “best model,” even when a “poor model” is used to fit the data. A comparison study of the SAMBA procedure with Stepwise Covariate Modeling (SCM) and COnditional Sampling use for Stepwise Approach (COSSAC) show similar performances on several real data examples but with a much reduced computing time. This algorithm is now implemented in Monolix and in the R package Rsmlx.
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spelling pubmed-88466362022-02-25 SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models Prague, Mélanie Lavielle, Marc CPT Pharmacometrics Syst Pharmacol Research The success of correctly identifying all the components of a nonlinear mixed‐effects model is far from straightforward: it is a question of finding the best structural model, determining the type of relationship between covariates and individual parameters, detecting possible correlations between random effects, or also modeling residual errors. We present the Stochastic Approximation for Model Building Algorithm (SAMBA) procedure and show how this algorithm can be used to speed up this process of model building by identifying at each step how best to improve some of the model components. The principle of this algorithm basically consists in “learning something” about the “best model,” even when a “poor model” is used to fit the data. A comparison study of the SAMBA procedure with Stepwise Covariate Modeling (SCM) and COnditional Sampling use for Stepwise Approach (COSSAC) show similar performances on several real data examples but with a much reduced computing time. This algorithm is now implemented in Monolix and in the R package Rsmlx. John Wiley and Sons Inc. 2022-02-01 2022-02 /pmc/articles/PMC8846636/ /pubmed/35104058 http://dx.doi.org/10.1002/psp4.12742 Text en © 2022 The Authors. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Research
Prague, Mélanie
Lavielle, Marc
SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models
title SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models
title_full SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models
title_fullStr SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models
title_full_unstemmed SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models
title_short SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models
title_sort samba: a novel method for fast automatic model building in nonlinear mixed‐effects models
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8846636/
https://www.ncbi.nlm.nih.gov/pubmed/35104058
http://dx.doi.org/10.1002/psp4.12742
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