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SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models
The success of correctly identifying all the components of a nonlinear mixed‐effects model is far from straightforward: it is a question of finding the best structural model, determining the type of relationship between covariates and individual parameters, detecting possible correlations between ra...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8846636/ https://www.ncbi.nlm.nih.gov/pubmed/35104058 http://dx.doi.org/10.1002/psp4.12742 |
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author | Prague, Mélanie Lavielle, Marc |
author_facet | Prague, Mélanie Lavielle, Marc |
author_sort | Prague, Mélanie |
collection | PubMed |
description | The success of correctly identifying all the components of a nonlinear mixed‐effects model is far from straightforward: it is a question of finding the best structural model, determining the type of relationship between covariates and individual parameters, detecting possible correlations between random effects, or also modeling residual errors. We present the Stochastic Approximation for Model Building Algorithm (SAMBA) procedure and show how this algorithm can be used to speed up this process of model building by identifying at each step how best to improve some of the model components. The principle of this algorithm basically consists in “learning something” about the “best model,” even when a “poor model” is used to fit the data. A comparison study of the SAMBA procedure with Stepwise Covariate Modeling (SCM) and COnditional Sampling use for Stepwise Approach (COSSAC) show similar performances on several real data examples but with a much reduced computing time. This algorithm is now implemented in Monolix and in the R package Rsmlx. |
format | Online Article Text |
id | pubmed-8846636 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88466362022-02-25 SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models Prague, Mélanie Lavielle, Marc CPT Pharmacometrics Syst Pharmacol Research The success of correctly identifying all the components of a nonlinear mixed‐effects model is far from straightforward: it is a question of finding the best structural model, determining the type of relationship between covariates and individual parameters, detecting possible correlations between random effects, or also modeling residual errors. We present the Stochastic Approximation for Model Building Algorithm (SAMBA) procedure and show how this algorithm can be used to speed up this process of model building by identifying at each step how best to improve some of the model components. The principle of this algorithm basically consists in “learning something” about the “best model,” even when a “poor model” is used to fit the data. A comparison study of the SAMBA procedure with Stepwise Covariate Modeling (SCM) and COnditional Sampling use for Stepwise Approach (COSSAC) show similar performances on several real data examples but with a much reduced computing time. This algorithm is now implemented in Monolix and in the R package Rsmlx. John Wiley and Sons Inc. 2022-02-01 2022-02 /pmc/articles/PMC8846636/ /pubmed/35104058 http://dx.doi.org/10.1002/psp4.12742 Text en © 2022 The Authors. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Research Prague, Mélanie Lavielle, Marc SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models |
title | SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models |
title_full | SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models |
title_fullStr | SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models |
title_full_unstemmed | SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models |
title_short | SAMBA: A novel method for fast automatic model building in nonlinear mixed‐effects models |
title_sort | samba: a novel method for fast automatic model building in nonlinear mixed‐effects models |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8846636/ https://www.ncbi.nlm.nih.gov/pubmed/35104058 http://dx.doi.org/10.1002/psp4.12742 |
work_keys_str_mv | AT praguemelanie sambaanovelmethodforfastautomaticmodelbuildinginnonlinearmixedeffectsmodels AT laviellemarc sambaanovelmethodforfastautomaticmodelbuildinginnonlinearmixedeffectsmodels |