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Comprehensive circRNA Analyses in Human Vertebrae of GIOP and Its Molecular Mechanism

Circular RNAs (circRNAs) are a novel class of noncoding RNAs that play important roles in human diseases. However, the regulation of circRNAs in glucocorticoid-induced osteoporosis (GIOP) has not been reported. In this study, we performed high-throughput sequencing to identify altered circRNAs in th...

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Autores principales: Wang, Linfeng, Ye, Hong, Huang, Douquan, Lu, Chengwu, Lin, Weiming, Chen, Xiaojie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8846982/
https://www.ncbi.nlm.nih.gov/pubmed/35178103
http://dx.doi.org/10.1155/2022/4203161
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author Wang, Linfeng
Ye, Hong
Huang, Douquan
Lu, Chengwu
Lin, Weiming
Chen, Xiaojie
author_facet Wang, Linfeng
Ye, Hong
Huang, Douquan
Lu, Chengwu
Lin, Weiming
Chen, Xiaojie
author_sort Wang, Linfeng
collection PubMed
description Circular RNAs (circRNAs) are a novel class of noncoding RNAs that play important roles in human diseases. However, the regulation of circRNAs in glucocorticoid-induced osteoporosis (GIOP) has not been reported. In this study, we performed high-throughput sequencing to identify altered circRNAs in the vertebrae from GIOP patients. A total of 65 clinical samples were collected in this study. Bioinformatics algorithms were employed to predict the target relationship between circRNAs and miRNAs and the circRNAs-miRNAs regulatory network. We focused on the top 10 significantly up-/downregulated circRNAs (hsa_circ_0004906, hsa_circ_0001172, hsa_circ_0005778, hsa_circ_0004276, hsa_circ_0005729, hsa_circ_0006173, hsa_circ_0007662, hsa_circ_0001451, hsa_circ_0001564, and hsa_circ_0108735) and measured their expression by qRT-PCR in clinical samples. Bioinformatics analyses demonstrated that 87 miRNAs were predicted in upregulated circRNAs and 104 miRNAs were predicted in downregulated circRNAs. The functional enrichment analysis showed these targeted miRNAs were significantly enriched in bone metabolism-related biological processes and pathways, including the MAPK signaling pathway, positive regulation of the metabolic process and metabolic pathways, etc. Collectively, our study revealed circRNA regulation and circRNAs-miRNAs regulatory network in GIOP for the first time, which provides a new perspective on the molecular mechanism of GIOP and lays a foundation for GIOP treatment.
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spelling pubmed-88469822022-02-16 Comprehensive circRNA Analyses in Human Vertebrae of GIOP and Its Molecular Mechanism Wang, Linfeng Ye, Hong Huang, Douquan Lu, Chengwu Lin, Weiming Chen, Xiaojie Evid Based Complement Alternat Med Research Article Circular RNAs (circRNAs) are a novel class of noncoding RNAs that play important roles in human diseases. However, the regulation of circRNAs in glucocorticoid-induced osteoporosis (GIOP) has not been reported. In this study, we performed high-throughput sequencing to identify altered circRNAs in the vertebrae from GIOP patients. A total of 65 clinical samples were collected in this study. Bioinformatics algorithms were employed to predict the target relationship between circRNAs and miRNAs and the circRNAs-miRNAs regulatory network. We focused on the top 10 significantly up-/downregulated circRNAs (hsa_circ_0004906, hsa_circ_0001172, hsa_circ_0005778, hsa_circ_0004276, hsa_circ_0005729, hsa_circ_0006173, hsa_circ_0007662, hsa_circ_0001451, hsa_circ_0001564, and hsa_circ_0108735) and measured their expression by qRT-PCR in clinical samples. Bioinformatics analyses demonstrated that 87 miRNAs were predicted in upregulated circRNAs and 104 miRNAs were predicted in downregulated circRNAs. The functional enrichment analysis showed these targeted miRNAs were significantly enriched in bone metabolism-related biological processes and pathways, including the MAPK signaling pathway, positive regulation of the metabolic process and metabolic pathways, etc. Collectively, our study revealed circRNA regulation and circRNAs-miRNAs regulatory network in GIOP for the first time, which provides a new perspective on the molecular mechanism of GIOP and lays a foundation for GIOP treatment. Hindawi 2022-02-08 /pmc/articles/PMC8846982/ /pubmed/35178103 http://dx.doi.org/10.1155/2022/4203161 Text en Copyright © 2022 Linfeng Wang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wang, Linfeng
Ye, Hong
Huang, Douquan
Lu, Chengwu
Lin, Weiming
Chen, Xiaojie
Comprehensive circRNA Analyses in Human Vertebrae of GIOP and Its Molecular Mechanism
title Comprehensive circRNA Analyses in Human Vertebrae of GIOP and Its Molecular Mechanism
title_full Comprehensive circRNA Analyses in Human Vertebrae of GIOP and Its Molecular Mechanism
title_fullStr Comprehensive circRNA Analyses in Human Vertebrae of GIOP and Its Molecular Mechanism
title_full_unstemmed Comprehensive circRNA Analyses in Human Vertebrae of GIOP and Its Molecular Mechanism
title_short Comprehensive circRNA Analyses in Human Vertebrae of GIOP and Its Molecular Mechanism
title_sort comprehensive circrna analyses in human vertebrae of giop and its molecular mechanism
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8846982/
https://www.ncbi.nlm.nih.gov/pubmed/35178103
http://dx.doi.org/10.1155/2022/4203161
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