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Does the punishment fit the crime? Consequences and diagnosis of misspecified detection functions in Bayesian spatial capture–recapture modeling

Spatial capture–recapture (SCR) analysis is now used routinely to inform wildlife management and conservation decisions. It is therefore imperative that we understand the implications of and can diagnose common SCR model misspecifications, as flawed inferences could propagate to policy and intervent...

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Autores principales: Dey, Soumen, Bischof, Richard, Dupont, Pierre P. A., Milleret, Cyril
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8847120/
https://www.ncbi.nlm.nih.gov/pubmed/35222967
http://dx.doi.org/10.1002/ece3.8600
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author Dey, Soumen
Bischof, Richard
Dupont, Pierre P. A.
Milleret, Cyril
author_facet Dey, Soumen
Bischof, Richard
Dupont, Pierre P. A.
Milleret, Cyril
author_sort Dey, Soumen
collection PubMed
description Spatial capture–recapture (SCR) analysis is now used routinely to inform wildlife management and conservation decisions. It is therefore imperative that we understand the implications of and can diagnose common SCR model misspecifications, as flawed inferences could propagate to policy and interventions. The detection function of an SCR model describes how an individual's detections are distributed in space. Despite the detection function's central role in SCR, little is known about the robustness of SCR‐derived abundance estimates and home range size estimates to misspecifications. Here, we set out to (a) determine whether abundance estimates are robust to a wider range of misspecifications of the detection function than previously explored, (b) quantify the sensitivity of home range size estimates to the choice of detection function, and (c) evaluate commonly used Bayesian p‐values for detecting misspecifications thereof. We simulated SCR data using different circular detection functions to emulate a wide range of space use patterns. We then fit Bayesian SCR models with three detection functions (half‐normal, exponential, and half‐normal plateau) to each simulated data set. While abundance estimates were very robust, estimates of home range size were sensitive to misspecifications of the detection function. When misspecified, SCR models with the half‐normal plateau and exponential detection functions produced the most and least reliable home range size, respectively. Misspecifications with the strongest impact on parameter estimates were easily detected by Bayesian p‐values. Practitioners using SCR exclusively for density estimation are unlikely to be impacted by misspecifications of the detection function. However, the choice of detection function can have substantial consequences for the reliability of inferences about space use. Although Bayesian p‐values can aid the diagnosis of detection function misspecification under certain conditions, we urge the development of additional custom goodness‐of‐fit diagnostics for Bayesian SCR models to identify a wider range of model misspecifications.
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spelling pubmed-88471202022-02-25 Does the punishment fit the crime? Consequences and diagnosis of misspecified detection functions in Bayesian spatial capture–recapture modeling Dey, Soumen Bischof, Richard Dupont, Pierre P. A. Milleret, Cyril Ecol Evol Research Articles Spatial capture–recapture (SCR) analysis is now used routinely to inform wildlife management and conservation decisions. It is therefore imperative that we understand the implications of and can diagnose common SCR model misspecifications, as flawed inferences could propagate to policy and interventions. The detection function of an SCR model describes how an individual's detections are distributed in space. Despite the detection function's central role in SCR, little is known about the robustness of SCR‐derived abundance estimates and home range size estimates to misspecifications. Here, we set out to (a) determine whether abundance estimates are robust to a wider range of misspecifications of the detection function than previously explored, (b) quantify the sensitivity of home range size estimates to the choice of detection function, and (c) evaluate commonly used Bayesian p‐values for detecting misspecifications thereof. We simulated SCR data using different circular detection functions to emulate a wide range of space use patterns. We then fit Bayesian SCR models with three detection functions (half‐normal, exponential, and half‐normal plateau) to each simulated data set. While abundance estimates were very robust, estimates of home range size were sensitive to misspecifications of the detection function. When misspecified, SCR models with the half‐normal plateau and exponential detection functions produced the most and least reliable home range size, respectively. Misspecifications with the strongest impact on parameter estimates were easily detected by Bayesian p‐values. Practitioners using SCR exclusively for density estimation are unlikely to be impacted by misspecifications of the detection function. However, the choice of detection function can have substantial consequences for the reliability of inferences about space use. Although Bayesian p‐values can aid the diagnosis of detection function misspecification under certain conditions, we urge the development of additional custom goodness‐of‐fit diagnostics for Bayesian SCR models to identify a wider range of model misspecifications. John Wiley and Sons Inc. 2022-02-15 /pmc/articles/PMC8847120/ /pubmed/35222967 http://dx.doi.org/10.1002/ece3.8600 Text en © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Dey, Soumen
Bischof, Richard
Dupont, Pierre P. A.
Milleret, Cyril
Does the punishment fit the crime? Consequences and diagnosis of misspecified detection functions in Bayesian spatial capture–recapture modeling
title Does the punishment fit the crime? Consequences and diagnosis of misspecified detection functions in Bayesian spatial capture–recapture modeling
title_full Does the punishment fit the crime? Consequences and diagnosis of misspecified detection functions in Bayesian spatial capture–recapture modeling
title_fullStr Does the punishment fit the crime? Consequences and diagnosis of misspecified detection functions in Bayesian spatial capture–recapture modeling
title_full_unstemmed Does the punishment fit the crime? Consequences and diagnosis of misspecified detection functions in Bayesian spatial capture–recapture modeling
title_short Does the punishment fit the crime? Consequences and diagnosis of misspecified detection functions in Bayesian spatial capture–recapture modeling
title_sort does the punishment fit the crime? consequences and diagnosis of misspecified detection functions in bayesian spatial capture–recapture modeling
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8847120/
https://www.ncbi.nlm.nih.gov/pubmed/35222967
http://dx.doi.org/10.1002/ece3.8600
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