Cargando…
Pseudo contrastive labeling for predicting IVF embryo developmental potential
In vitro fertilization is typically associated with high failure rates per transfer, leading to an acute need for the identification of embryos with high developmental potential. Current methods are tailored to specific times after fertilization, often require expert inspection, and have low predict...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8847488/ https://www.ncbi.nlm.nih.gov/pubmed/35169194 http://dx.doi.org/10.1038/s41598-022-06336-y |
_version_ | 1784652062826430464 |
---|---|
author | Erlich, I. Ben-Meir, A. Har-Vardi, I. Grifo, J. Wang, F. Mccaffrey, C. McCulloh, D. Or, Y. Wolf, L. |
author_facet | Erlich, I. Ben-Meir, A. Har-Vardi, I. Grifo, J. Wang, F. Mccaffrey, C. McCulloh, D. Or, Y. Wolf, L. |
author_sort | Erlich, I. |
collection | PubMed |
description | In vitro fertilization is typically associated with high failure rates per transfer, leading to an acute need for the identification of embryos with high developmental potential. Current methods are tailored to specific times after fertilization, often require expert inspection, and have low predictive power. Automatic methods are challenged by ambiguous labels, clinical heterogeneity, and the inability to utilize multiple developmental points. In this work, we propose a novel method that trains a classifier conditioned on the time since fertilization. This classifier is then integrated over time and its output is used to assign soft labels to pairs of samples. The classifier obtained by training on these soft labels presents a significant improvement in accuracy, even as early as 30 h post-fertilization. By integrating the classification scores, the predictive power is further improved. Our results are superior to previously reported methods, including the commercial KIDScore-D3 system, and a group of eight senior professionals, in classifying multiple groups of favorable embryos into groups defined as less favorable based on implantation outcomes, expert decisions based on developmental trajectories, and/or genetic tests. |
format | Online Article Text |
id | pubmed-8847488 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-88474882022-02-17 Pseudo contrastive labeling for predicting IVF embryo developmental potential Erlich, I. Ben-Meir, A. Har-Vardi, I. Grifo, J. Wang, F. Mccaffrey, C. McCulloh, D. Or, Y. Wolf, L. Sci Rep Article In vitro fertilization is typically associated with high failure rates per transfer, leading to an acute need for the identification of embryos with high developmental potential. Current methods are tailored to specific times after fertilization, often require expert inspection, and have low predictive power. Automatic methods are challenged by ambiguous labels, clinical heterogeneity, and the inability to utilize multiple developmental points. In this work, we propose a novel method that trains a classifier conditioned on the time since fertilization. This classifier is then integrated over time and its output is used to assign soft labels to pairs of samples. The classifier obtained by training on these soft labels presents a significant improvement in accuracy, even as early as 30 h post-fertilization. By integrating the classification scores, the predictive power is further improved. Our results are superior to previously reported methods, including the commercial KIDScore-D3 system, and a group of eight senior professionals, in classifying multiple groups of favorable embryos into groups defined as less favorable based on implantation outcomes, expert decisions based on developmental trajectories, and/or genetic tests. Nature Publishing Group UK 2022-02-15 /pmc/articles/PMC8847488/ /pubmed/35169194 http://dx.doi.org/10.1038/s41598-022-06336-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Erlich, I. Ben-Meir, A. Har-Vardi, I. Grifo, J. Wang, F. Mccaffrey, C. McCulloh, D. Or, Y. Wolf, L. Pseudo contrastive labeling for predicting IVF embryo developmental potential |
title | Pseudo contrastive labeling for predicting IVF embryo developmental potential |
title_full | Pseudo contrastive labeling for predicting IVF embryo developmental potential |
title_fullStr | Pseudo contrastive labeling for predicting IVF embryo developmental potential |
title_full_unstemmed | Pseudo contrastive labeling for predicting IVF embryo developmental potential |
title_short | Pseudo contrastive labeling for predicting IVF embryo developmental potential |
title_sort | pseudo contrastive labeling for predicting ivf embryo developmental potential |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8847488/ https://www.ncbi.nlm.nih.gov/pubmed/35169194 http://dx.doi.org/10.1038/s41598-022-06336-y |
work_keys_str_mv | AT erlichi pseudocontrastivelabelingforpredictingivfembryodevelopmentalpotential AT benmeira pseudocontrastivelabelingforpredictingivfembryodevelopmentalpotential AT harvardii pseudocontrastivelabelingforpredictingivfembryodevelopmentalpotential AT grifoj pseudocontrastivelabelingforpredictingivfembryodevelopmentalpotential AT wangf pseudocontrastivelabelingforpredictingivfembryodevelopmentalpotential AT mccaffreyc pseudocontrastivelabelingforpredictingivfembryodevelopmentalpotential AT mccullohd pseudocontrastivelabelingforpredictingivfembryodevelopmentalpotential AT ory pseudocontrastivelabelingforpredictingivfembryodevelopmentalpotential AT wolfl pseudocontrastivelabelingforpredictingivfembryodevelopmentalpotential |