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Identification of the key genes and immune infiltrating cells determined by sex differences in ischaemic stroke through co‐expression network module
Stroke is one of the leading causes of patients' death and long‐term disability worldwide, and ischaemic stroke (IS) accounts for nearly 80% of all strokes. Differential genes and weighted gene co‐expression network analysis (WGCNA) in male and female patients with IS were compared. The authors...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8849259/ https://www.ncbi.nlm.nih.gov/pubmed/34792838 http://dx.doi.org/10.1049/syb2.12039 |
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author | Xu, Haipeng Ge, Yanzhi Liu, Yang Zheng, Yang Hu, Rong Ren, Conglin Liu, Qianqian |
author_facet | Xu, Haipeng Ge, Yanzhi Liu, Yang Zheng, Yang Hu, Rong Ren, Conglin Liu, Qianqian |
author_sort | Xu, Haipeng |
collection | PubMed |
description | Stroke is one of the leading causes of patients' death and long‐term disability worldwide, and ischaemic stroke (IS) accounts for nearly 80% of all strokes. Differential genes and weighted gene co‐expression network analysis (WGCNA) in male and female patients with IS were compared. The authors used cell type identification by estimating relative subsets of RNA transcripts (CIBERSORT) to analyse the distribution pattern of immune subtypes between male and female patients. In this study, 141 up‐regulated and 61 down‐regulated genes were gathered and distributed into five modules in response to their correlation degree to clinical traits. The criterion for Gene Ontology (GO) term and Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway indicated that detailed analysis had the potential to enhance clinical prediction and to identify the gender‐related mechanism. After that, the expression levels of hub genes were measured via the quantitative real‐time PCR (qRT‐PCR) method. Finally, CCL20, ICAM1 and PTGS2 were identified and these may be some promising targets for sex differences in IS. Besides, the hub genes were further verified by rat experiments. Furthermore, these CIBERSORT results showed that T cells CD8 and Monocytes may be the target for the treatment of male and female patients, respectively. |
format | Online Article Text |
id | pubmed-8849259 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88492592022-02-17 Identification of the key genes and immune infiltrating cells determined by sex differences in ischaemic stroke through co‐expression network module Xu, Haipeng Ge, Yanzhi Liu, Yang Zheng, Yang Hu, Rong Ren, Conglin Liu, Qianqian IET Syst Biol Original Research Papers Stroke is one of the leading causes of patients' death and long‐term disability worldwide, and ischaemic stroke (IS) accounts for nearly 80% of all strokes. Differential genes and weighted gene co‐expression network analysis (WGCNA) in male and female patients with IS were compared. The authors used cell type identification by estimating relative subsets of RNA transcripts (CIBERSORT) to analyse the distribution pattern of immune subtypes between male and female patients. In this study, 141 up‐regulated and 61 down‐regulated genes were gathered and distributed into five modules in response to their correlation degree to clinical traits. The criterion for Gene Ontology (GO) term and Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway indicated that detailed analysis had the potential to enhance clinical prediction and to identify the gender‐related mechanism. After that, the expression levels of hub genes were measured via the quantitative real‐time PCR (qRT‐PCR) method. Finally, CCL20, ICAM1 and PTGS2 were identified and these may be some promising targets for sex differences in IS. Besides, the hub genes were further verified by rat experiments. Furthermore, these CIBERSORT results showed that T cells CD8 and Monocytes may be the target for the treatment of male and female patients, respectively. John Wiley and Sons Inc. 2021-11-18 /pmc/articles/PMC8849259/ /pubmed/34792838 http://dx.doi.org/10.1049/syb2.12039 Text en © 2021 The Authors. IET Systems Biology published by John Wiley & Sons Ltd on behalf of The Institution of Engineering and Technology. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Papers Xu, Haipeng Ge, Yanzhi Liu, Yang Zheng, Yang Hu, Rong Ren, Conglin Liu, Qianqian Identification of the key genes and immune infiltrating cells determined by sex differences in ischaemic stroke through co‐expression network module |
title | Identification of the key genes and immune infiltrating cells determined by sex differences in ischaemic stroke through co‐expression network module |
title_full | Identification of the key genes and immune infiltrating cells determined by sex differences in ischaemic stroke through co‐expression network module |
title_fullStr | Identification of the key genes and immune infiltrating cells determined by sex differences in ischaemic stroke through co‐expression network module |
title_full_unstemmed | Identification of the key genes and immune infiltrating cells determined by sex differences in ischaemic stroke through co‐expression network module |
title_short | Identification of the key genes and immune infiltrating cells determined by sex differences in ischaemic stroke through co‐expression network module |
title_sort | identification of the key genes and immune infiltrating cells determined by sex differences in ischaemic stroke through co‐expression network module |
topic | Original Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8849259/ https://www.ncbi.nlm.nih.gov/pubmed/34792838 http://dx.doi.org/10.1049/syb2.12039 |
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