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Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines

Epidemics are among the most costly and destructive natural hazards globally. To reduce the impacts of infectious disease outbreaks, the development of a risk index for infectious diseases can be effective, by shifting infectious disease control from emergency response to early detection and prevent...

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Autores principales: Hierink, Fleur, Margutti, Jacopo, van den Homberg, Marc, Ray, Nicolas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8849499/
https://www.ncbi.nlm.nih.gov/pubmed/35120122
http://dx.doi.org/10.1371/journal.pntd.0009262
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author Hierink, Fleur
Margutti, Jacopo
van den Homberg, Marc
Ray, Nicolas
author_facet Hierink, Fleur
Margutti, Jacopo
van den Homberg, Marc
Ray, Nicolas
author_sort Hierink, Fleur
collection PubMed
description Epidemics are among the most costly and destructive natural hazards globally. To reduce the impacts of infectious disease outbreaks, the development of a risk index for infectious diseases can be effective, by shifting infectious disease control from emergency response to early detection and prevention. In this study, we introduce a methodology to construct and validate an epidemic risk index using only open data, with a specific focus on scalability. The external validation of our risk index makes use of distance sampling to correct for underreporting of infections, which is often a major source of biases, based on geographical accessibility to health facilities. We apply this methodology to assess the risk of dengue in the Philippines. The results show that the computed dengue risk correlates well with standard epidemiological metrics, i.e. dengue incidence (p = 0.002). Here, dengue risk constitutes of the two dimensions susceptibility and exposure. Susceptibility was particularly associated with dengue incidence (p = 0.048) and dengue case fatality rate (CFR) (p = 0.029). Exposure had lower correlations to dengue incidence (p = 0.193) and CFR (p = 0.162). Highest risk indices were seen in the south of the country, mainly among regions with relatively high susceptibility to dengue outbreaks. Our findings reflect that the modelled epidemic risk index is a strong indication of sub-national dengue disease patterns and has therefore proven suitability for disease risk assessments in the absence of timely epidemiological data. The presented methodology enables the construction of a practical, evidence-based tool to support public health and humanitarian decision-making processes with simple, understandable metrics. The index overcomes the main limitations of existing indices in terms of construction and actionability.
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spelling pubmed-88494992022-02-17 Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines Hierink, Fleur Margutti, Jacopo van den Homberg, Marc Ray, Nicolas PLoS Negl Trop Dis Research Article Epidemics are among the most costly and destructive natural hazards globally. To reduce the impacts of infectious disease outbreaks, the development of a risk index for infectious diseases can be effective, by shifting infectious disease control from emergency response to early detection and prevention. In this study, we introduce a methodology to construct and validate an epidemic risk index using only open data, with a specific focus on scalability. The external validation of our risk index makes use of distance sampling to correct for underreporting of infections, which is often a major source of biases, based on geographical accessibility to health facilities. We apply this methodology to assess the risk of dengue in the Philippines. The results show that the computed dengue risk correlates well with standard epidemiological metrics, i.e. dengue incidence (p = 0.002). Here, dengue risk constitutes of the two dimensions susceptibility and exposure. Susceptibility was particularly associated with dengue incidence (p = 0.048) and dengue case fatality rate (CFR) (p = 0.029). Exposure had lower correlations to dengue incidence (p = 0.193) and CFR (p = 0.162). Highest risk indices were seen in the south of the country, mainly among regions with relatively high susceptibility to dengue outbreaks. Our findings reflect that the modelled epidemic risk index is a strong indication of sub-national dengue disease patterns and has therefore proven suitability for disease risk assessments in the absence of timely epidemiological data. The presented methodology enables the construction of a practical, evidence-based tool to support public health and humanitarian decision-making processes with simple, understandable metrics. The index overcomes the main limitations of existing indices in terms of construction and actionability. Public Library of Science 2022-02-04 /pmc/articles/PMC8849499/ /pubmed/35120122 http://dx.doi.org/10.1371/journal.pntd.0009262 Text en © 2022 Hierink et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hierink, Fleur
Margutti, Jacopo
van den Homberg, Marc
Ray, Nicolas
Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines
title Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines
title_full Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines
title_fullStr Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines
title_full_unstemmed Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines
title_short Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines
title_sort constructing and validating a transferable epidemic risk index in data scarce environments using open data: a case study for dengue in the philippines
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8849499/
https://www.ncbi.nlm.nih.gov/pubmed/35120122
http://dx.doi.org/10.1371/journal.pntd.0009262
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