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Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines
Epidemics are among the most costly and destructive natural hazards globally. To reduce the impacts of infectious disease outbreaks, the development of a risk index for infectious diseases can be effective, by shifting infectious disease control from emergency response to early detection and prevent...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8849499/ https://www.ncbi.nlm.nih.gov/pubmed/35120122 http://dx.doi.org/10.1371/journal.pntd.0009262 |
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author | Hierink, Fleur Margutti, Jacopo van den Homberg, Marc Ray, Nicolas |
author_facet | Hierink, Fleur Margutti, Jacopo van den Homberg, Marc Ray, Nicolas |
author_sort | Hierink, Fleur |
collection | PubMed |
description | Epidemics are among the most costly and destructive natural hazards globally. To reduce the impacts of infectious disease outbreaks, the development of a risk index for infectious diseases can be effective, by shifting infectious disease control from emergency response to early detection and prevention. In this study, we introduce a methodology to construct and validate an epidemic risk index using only open data, with a specific focus on scalability. The external validation of our risk index makes use of distance sampling to correct for underreporting of infections, which is often a major source of biases, based on geographical accessibility to health facilities. We apply this methodology to assess the risk of dengue in the Philippines. The results show that the computed dengue risk correlates well with standard epidemiological metrics, i.e. dengue incidence (p = 0.002). Here, dengue risk constitutes of the two dimensions susceptibility and exposure. Susceptibility was particularly associated with dengue incidence (p = 0.048) and dengue case fatality rate (CFR) (p = 0.029). Exposure had lower correlations to dengue incidence (p = 0.193) and CFR (p = 0.162). Highest risk indices were seen in the south of the country, mainly among regions with relatively high susceptibility to dengue outbreaks. Our findings reflect that the modelled epidemic risk index is a strong indication of sub-national dengue disease patterns and has therefore proven suitability for disease risk assessments in the absence of timely epidemiological data. The presented methodology enables the construction of a practical, evidence-based tool to support public health and humanitarian decision-making processes with simple, understandable metrics. The index overcomes the main limitations of existing indices in terms of construction and actionability. |
format | Online Article Text |
id | pubmed-8849499 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-88494992022-02-17 Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines Hierink, Fleur Margutti, Jacopo van den Homberg, Marc Ray, Nicolas PLoS Negl Trop Dis Research Article Epidemics are among the most costly and destructive natural hazards globally. To reduce the impacts of infectious disease outbreaks, the development of a risk index for infectious diseases can be effective, by shifting infectious disease control from emergency response to early detection and prevention. In this study, we introduce a methodology to construct and validate an epidemic risk index using only open data, with a specific focus on scalability. The external validation of our risk index makes use of distance sampling to correct for underreporting of infections, which is often a major source of biases, based on geographical accessibility to health facilities. We apply this methodology to assess the risk of dengue in the Philippines. The results show that the computed dengue risk correlates well with standard epidemiological metrics, i.e. dengue incidence (p = 0.002). Here, dengue risk constitutes of the two dimensions susceptibility and exposure. Susceptibility was particularly associated with dengue incidence (p = 0.048) and dengue case fatality rate (CFR) (p = 0.029). Exposure had lower correlations to dengue incidence (p = 0.193) and CFR (p = 0.162). Highest risk indices were seen in the south of the country, mainly among regions with relatively high susceptibility to dengue outbreaks. Our findings reflect that the modelled epidemic risk index is a strong indication of sub-national dengue disease patterns and has therefore proven suitability for disease risk assessments in the absence of timely epidemiological data. The presented methodology enables the construction of a practical, evidence-based tool to support public health and humanitarian decision-making processes with simple, understandable metrics. The index overcomes the main limitations of existing indices in terms of construction and actionability. Public Library of Science 2022-02-04 /pmc/articles/PMC8849499/ /pubmed/35120122 http://dx.doi.org/10.1371/journal.pntd.0009262 Text en © 2022 Hierink et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Hierink, Fleur Margutti, Jacopo van den Homberg, Marc Ray, Nicolas Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines |
title | Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines |
title_full | Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines |
title_fullStr | Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines |
title_full_unstemmed | Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines |
title_short | Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines |
title_sort | constructing and validating a transferable epidemic risk index in data scarce environments using open data: a case study for dengue in the philippines |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8849499/ https://www.ncbi.nlm.nih.gov/pubmed/35120122 http://dx.doi.org/10.1371/journal.pntd.0009262 |
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