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Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini)

Anthidiini, a large bee tribe characterized by light-colored maculations, represents nearly 1,000 pollinator species, but no genomes are yet available for this tribe. Here, we report a chromosome-level genome assembly of Anthidium xuezhongi collected from the Tibetan Plateau. Using PacBio long reads...

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Autores principales: Zhang, Dan, Jin, Jianfeng, Niu, Zeqing, Zhang, Feng, Orr, Michael C, Zhou, Qingsong, Luo, Arong, Zhu, Chaodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8850706/
https://www.ncbi.nlm.nih.gov/pubmed/35150256
http://dx.doi.org/10.1093/gbe/evac014
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author Zhang, Dan
Jin, Jianfeng
Niu, Zeqing
Zhang, Feng
Orr, Michael C
Zhou, Qingsong
Luo, Arong
Zhu, Chaodong
author_facet Zhang, Dan
Jin, Jianfeng
Niu, Zeqing
Zhang, Feng
Orr, Michael C
Zhou, Qingsong
Luo, Arong
Zhu, Chaodong
author_sort Zhang, Dan
collection PubMed
description Anthidiini, a large bee tribe characterized by light-colored maculations, represents nearly 1,000 pollinator species, but no genomes are yet available for this tribe. Here, we report a chromosome-level genome assembly of Anthidium xuezhongi collected from the Tibetan Plateau. Using PacBio long reads and Hi-C data, we assembled a genome of 189.14 Mb with 99.94% of the assembly located in 16 chromosomes. Our assembly contains 23 scaffolds, with the scaffold N50 length of 12.53 Mb, and BUSCO completeness of 98.70% (n = 1,367). We masked 25.98 Mb (13.74%) of the assembly as repetitive elements, identified 385 noncoding RNAs, and predicted 10,820 protein-coding genes (99.20% BUSCO completeness). Gene family evolution analyses identified 9,251 gene families, of which 31 gene families experienced rapid evolution. Interspecific chromosomal variation among A. xuezhongi, Bombus terrestris, and Apis mellifera showed strong chromosomal syntenic relationships. This high-quality genome assembly is a valuable resource for evolutionary and comparative genomic analyses of bees.
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spelling pubmed-88507062022-02-17 Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini) Zhang, Dan Jin, Jianfeng Niu, Zeqing Zhang, Feng Orr, Michael C Zhou, Qingsong Luo, Arong Zhu, Chaodong Genome Biol Evol Genome Report Anthidiini, a large bee tribe characterized by light-colored maculations, represents nearly 1,000 pollinator species, but no genomes are yet available for this tribe. Here, we report a chromosome-level genome assembly of Anthidium xuezhongi collected from the Tibetan Plateau. Using PacBio long reads and Hi-C data, we assembled a genome of 189.14 Mb with 99.94% of the assembly located in 16 chromosomes. Our assembly contains 23 scaffolds, with the scaffold N50 length of 12.53 Mb, and BUSCO completeness of 98.70% (n = 1,367). We masked 25.98 Mb (13.74%) of the assembly as repetitive elements, identified 385 noncoding RNAs, and predicted 10,820 protein-coding genes (99.20% BUSCO completeness). Gene family evolution analyses identified 9,251 gene families, of which 31 gene families experienced rapid evolution. Interspecific chromosomal variation among A. xuezhongi, Bombus terrestris, and Apis mellifera showed strong chromosomal syntenic relationships. This high-quality genome assembly is a valuable resource for evolutionary and comparative genomic analyses of bees. Oxford University Press 2022-02-12 /pmc/articles/PMC8850706/ /pubmed/35150256 http://dx.doi.org/10.1093/gbe/evac014 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Zhang, Dan
Jin, Jianfeng
Niu, Zeqing
Zhang, Feng
Orr, Michael C
Zhou, Qingsong
Luo, Arong
Zhu, Chaodong
Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini)
title Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini)
title_full Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini)
title_fullStr Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini)
title_full_unstemmed Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini)
title_short Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini)
title_sort chromosome-level genome assembly of anthidium xuezhongi niu & zhu, 2020 (hymenoptera: apoidea: megachilidae: anthidiini)
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8850706/
https://www.ncbi.nlm.nih.gov/pubmed/35150256
http://dx.doi.org/10.1093/gbe/evac014
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