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EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks
Accurately inferring underlying electrophysiological (EP) tissue properties from action potential recordings is expected to be clinically useful in the diagnosis and treatment of arrhythmias such as atrial fibrillation. It is, however, notoriously difficult to perform. We present EP-PINNs (Physics I...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8850959/ https://www.ncbi.nlm.nih.gov/pubmed/35187101 http://dx.doi.org/10.3389/fcvm.2021.768419 |
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author | Herrero Martin, Clara Oved, Alon Chowdhury, Rasheda A. Ullmann, Elisabeth Peters, Nicholas S. Bharath, Anil A. Varela, Marta |
author_facet | Herrero Martin, Clara Oved, Alon Chowdhury, Rasheda A. Ullmann, Elisabeth Peters, Nicholas S. Bharath, Anil A. Varela, Marta |
author_sort | Herrero Martin, Clara |
collection | PubMed |
description | Accurately inferring underlying electrophysiological (EP) tissue properties from action potential recordings is expected to be clinically useful in the diagnosis and treatment of arrhythmias such as atrial fibrillation. It is, however, notoriously difficult to perform. We present EP-PINNs (Physics Informed Neural Networks), a novel tool for accurate action potential simulation and EP parameter estimation from sparse amounts of EP data. We demonstrate, using 1D and 2D in silico data, how EP-PINNs are able to reconstruct the spatio-temporal evolution of action potentials, whilst predicting parameters related to action potential duration (APD), excitability and diffusion coefficients. EP-PINNs are additionally able to identify heterogeneities in EP properties, making them potentially useful for the detection of fibrosis and other localised pathology linked to arrhythmias. Finally, we show EP-PINNs effectiveness on biological in vitro preparations, by characterising the effect of anti-arrhythmic drugs on APD using optical mapping data. EP-PINNs are a promising clinical tool for the characterisation and potential treatment guidance of arrhythmias. |
format | Online Article Text |
id | pubmed-8850959 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88509592022-02-18 EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks Herrero Martin, Clara Oved, Alon Chowdhury, Rasheda A. Ullmann, Elisabeth Peters, Nicholas S. Bharath, Anil A. Varela, Marta Front Cardiovasc Med Cardiovascular Medicine Accurately inferring underlying electrophysiological (EP) tissue properties from action potential recordings is expected to be clinically useful in the diagnosis and treatment of arrhythmias such as atrial fibrillation. It is, however, notoriously difficult to perform. We present EP-PINNs (Physics Informed Neural Networks), a novel tool for accurate action potential simulation and EP parameter estimation from sparse amounts of EP data. We demonstrate, using 1D and 2D in silico data, how EP-PINNs are able to reconstruct the spatio-temporal evolution of action potentials, whilst predicting parameters related to action potential duration (APD), excitability and diffusion coefficients. EP-PINNs are additionally able to identify heterogeneities in EP properties, making them potentially useful for the detection of fibrosis and other localised pathology linked to arrhythmias. Finally, we show EP-PINNs effectiveness on biological in vitro preparations, by characterising the effect of anti-arrhythmic drugs on APD using optical mapping data. EP-PINNs are a promising clinical tool for the characterisation and potential treatment guidance of arrhythmias. Frontiers Media S.A. 2022-02-03 /pmc/articles/PMC8850959/ /pubmed/35187101 http://dx.doi.org/10.3389/fcvm.2021.768419 Text en Copyright © 2022 Herrero Martin, Oved, Chowdhury, Ullmann, Peters, Bharath and Varela. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine Herrero Martin, Clara Oved, Alon Chowdhury, Rasheda A. Ullmann, Elisabeth Peters, Nicholas S. Bharath, Anil A. Varela, Marta EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks |
title | EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks |
title_full | EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks |
title_fullStr | EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks |
title_full_unstemmed | EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks |
title_short | EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks |
title_sort | ep-pinns: cardiac electrophysiology characterisation using physics-informed neural networks |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8850959/ https://www.ncbi.nlm.nih.gov/pubmed/35187101 http://dx.doi.org/10.3389/fcvm.2021.768419 |
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