Cargando…

Integrative learning for population of dynamic networks with covariates

Although there is a rapidly growing literature on dynamic connectivity methods, the primary focus has been on separate network estimation for each individual, which fails to leverage common patterns of information. We propose novel graph-theoretic approaches for estimating a population of dynamic ne...

Descripción completa

Detalles Bibliográficos
Autores principales: Kundu, Suprateek, Ming, Jin, Nocera, Joe, McGregor, Keith M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8851385/
https://www.ncbi.nlm.nih.gov/pubmed/34022384
http://dx.doi.org/10.1016/j.neuroimage.2021.118181
_version_ 1784652809871818752
author Kundu, Suprateek
Ming, Jin
Nocera, Joe
McGregor, Keith M.
author_facet Kundu, Suprateek
Ming, Jin
Nocera, Joe
McGregor, Keith M.
author_sort Kundu, Suprateek
collection PubMed
description Although there is a rapidly growing literature on dynamic connectivity methods, the primary focus has been on separate network estimation for each individual, which fails to leverage common patterns of information. We propose novel graph-theoretic approaches for estimating a population of dynamic networks that are able to borrow information across multiple heterogeneous samples in an unsupervised manner and guided by covariate information. Specifically, we develop a Bayesian product mixture model that imposes independent mixture priors at each time scan and uses covariates to model the mixture weights, which results in time-varying clusters of samples designed to pool information. The computation is carried out using an effcient Expectation-Maximization algorithm. Extensive simulation studies illustrate sharp gains in recovering the true dynamic network over existing dynamic connectivity methods. An analysis of fMRI block task data with behavioral interventions reveal subgroups of individuals having similar dynamic connectivity, and identifies intervention-related dynamic network changes that are concentrated in biologically interpretable brain regions. In contrast, existing dynamic connectivity approaches are able to detect minimal or no changes in connectivity over time, which seems biologically unrealistic and highlights the challenges resulting from the inability to systematically borrow information across samples.
format Online
Article
Text
id pubmed-8851385
institution National Center for Biotechnology Information
language English
publishDate 2021
record_format MEDLINE/PubMed
spelling pubmed-88513852022-02-17 Integrative learning for population of dynamic networks with covariates Kundu, Suprateek Ming, Jin Nocera, Joe McGregor, Keith M. Neuroimage Article Although there is a rapidly growing literature on dynamic connectivity methods, the primary focus has been on separate network estimation for each individual, which fails to leverage common patterns of information. We propose novel graph-theoretic approaches for estimating a population of dynamic networks that are able to borrow information across multiple heterogeneous samples in an unsupervised manner and guided by covariate information. Specifically, we develop a Bayesian product mixture model that imposes independent mixture priors at each time scan and uses covariates to model the mixture weights, which results in time-varying clusters of samples designed to pool information. The computation is carried out using an effcient Expectation-Maximization algorithm. Extensive simulation studies illustrate sharp gains in recovering the true dynamic network over existing dynamic connectivity methods. An analysis of fMRI block task data with behavioral interventions reveal subgroups of individuals having similar dynamic connectivity, and identifies intervention-related dynamic network changes that are concentrated in biologically interpretable brain regions. In contrast, existing dynamic connectivity approaches are able to detect minimal or no changes in connectivity over time, which seems biologically unrealistic and highlights the challenges resulting from the inability to systematically borrow information across samples. 2021-08-01 2021-05-20 /pmc/articles/PMC8851385/ /pubmed/34022384 http://dx.doi.org/10.1016/j.neuroimage.2021.118181 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) )
spellingShingle Article
Kundu, Suprateek
Ming, Jin
Nocera, Joe
McGregor, Keith M.
Integrative learning for population of dynamic networks with covariates
title Integrative learning for population of dynamic networks with covariates
title_full Integrative learning for population of dynamic networks with covariates
title_fullStr Integrative learning for population of dynamic networks with covariates
title_full_unstemmed Integrative learning for population of dynamic networks with covariates
title_short Integrative learning for population of dynamic networks with covariates
title_sort integrative learning for population of dynamic networks with covariates
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8851385/
https://www.ncbi.nlm.nih.gov/pubmed/34022384
http://dx.doi.org/10.1016/j.neuroimage.2021.118181
work_keys_str_mv AT kundusuprateek integrativelearningforpopulationofdynamicnetworkswithcovariates
AT mingjin integrativelearningforpopulationofdynamicnetworkswithcovariates
AT nocerajoe integrativelearningforpopulationofdynamicnetworkswithcovariates
AT mcgregorkeithm integrativelearningforpopulationofdynamicnetworkswithcovariates