Cargando…

In silico analyses of maleidride biosynthetic gene clusters

Maleidrides are a family of structurally related fungal natural products, many of which possess diverse, potent bioactivities. Previous identification of several maleidride biosynthetic gene clusters, and subsequent experimental work, has determined the ‘core’ set of genes required to construct the...

Descripción completa

Detalles Bibliográficos
Autores principales: Williams, Katherine, de Mattos-Shipley, Kate M. J., Willis, Christine L., Bailey, Andrew M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8851701/
https://www.ncbi.nlm.nih.gov/pubmed/35177129
http://dx.doi.org/10.1186/s40694-022-00132-z
_version_ 1784652874864656384
author Williams, Katherine
de Mattos-Shipley, Kate M. J.
Willis, Christine L.
Bailey, Andrew M.
author_facet Williams, Katherine
de Mattos-Shipley, Kate M. J.
Willis, Christine L.
Bailey, Andrew M.
author_sort Williams, Katherine
collection PubMed
description Maleidrides are a family of structurally related fungal natural products, many of which possess diverse, potent bioactivities. Previous identification of several maleidride biosynthetic gene clusters, and subsequent experimental work, has determined the ‘core’ set of genes required to construct the characteristic medium-sized alicyclic ring with maleic anhydride moieties. Through genome mining, this work has used these core genes to discover ten entirely novel putative maleidride biosynthetic gene clusters, amongst both publicly available genomes, and encoded within the genome of the previously un-sequenced epiheveadride producer Wicklowia aquatica CBS 125634. We have undertaken phylogenetic analyses and comparative bioinformatics on all known and putative maleidride biosynthetic gene clusters to gain further insights regarding these unique biosynthetic pathways. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40694-022-00132-z.
format Online
Article
Text
id pubmed-8851701
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-88517012022-02-22 In silico analyses of maleidride biosynthetic gene clusters Williams, Katherine de Mattos-Shipley, Kate M. J. Willis, Christine L. Bailey, Andrew M. Fungal Biol Biotechnol Research Maleidrides are a family of structurally related fungal natural products, many of which possess diverse, potent bioactivities. Previous identification of several maleidride biosynthetic gene clusters, and subsequent experimental work, has determined the ‘core’ set of genes required to construct the characteristic medium-sized alicyclic ring with maleic anhydride moieties. Through genome mining, this work has used these core genes to discover ten entirely novel putative maleidride biosynthetic gene clusters, amongst both publicly available genomes, and encoded within the genome of the previously un-sequenced epiheveadride producer Wicklowia aquatica CBS 125634. We have undertaken phylogenetic analyses and comparative bioinformatics on all known and putative maleidride biosynthetic gene clusters to gain further insights regarding these unique biosynthetic pathways. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40694-022-00132-z. BioMed Central 2022-02-17 /pmc/articles/PMC8851701/ /pubmed/35177129 http://dx.doi.org/10.1186/s40694-022-00132-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Williams, Katherine
de Mattos-Shipley, Kate M. J.
Willis, Christine L.
Bailey, Andrew M.
In silico analyses of maleidride biosynthetic gene clusters
title In silico analyses of maleidride biosynthetic gene clusters
title_full In silico analyses of maleidride biosynthetic gene clusters
title_fullStr In silico analyses of maleidride biosynthetic gene clusters
title_full_unstemmed In silico analyses of maleidride biosynthetic gene clusters
title_short In silico analyses of maleidride biosynthetic gene clusters
title_sort in silico analyses of maleidride biosynthetic gene clusters
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8851701/
https://www.ncbi.nlm.nih.gov/pubmed/35177129
http://dx.doi.org/10.1186/s40694-022-00132-z
work_keys_str_mv AT williamskatherine insilicoanalysesofmaleidridebiosyntheticgeneclusters
AT demattosshipleykatemj insilicoanalysesofmaleidridebiosyntheticgeneclusters
AT willischristinel insilicoanalysesofmaleidridebiosyntheticgeneclusters
AT baileyandrewm insilicoanalysesofmaleidridebiosyntheticgeneclusters