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Crystalline Sponge Method by Three-Dimensional Electron Diffraction
The crystalline sponge method has shown to be a novel strategy for the structure determination of noncrystalline, oily, or trace amount of a compound. A target compound was absorbed and oriented orderly in the pregrown porous crystal for x-ray diffraction analysis. However, the diffusion in the micr...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8859408/ https://www.ncbi.nlm.nih.gov/pubmed/35198600 http://dx.doi.org/10.3389/fmolb.2021.821927 |
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author | Chen, Pohua Liu, Yang Zhang, Chaochao Huang, Fei Liu, Leifeng Sun, Junliang |
author_facet | Chen, Pohua Liu, Yang Zhang, Chaochao Huang, Fei Liu, Leifeng Sun, Junliang |
author_sort | Chen, Pohua |
collection | PubMed |
description | The crystalline sponge method has shown to be a novel strategy for the structure determination of noncrystalline, oily, or trace amount of a compound. A target compound was absorbed and oriented orderly in the pregrown porous crystal for x-ray diffraction analysis. However, the diffusion in the micron-sized crystals is rather difficult. Lots of trial-and-error experiments are needed to optimize the guest-soaking process and to improve data quality. Nanocrystals are better in diffusion, yet it could not conduct a single crystal x-ray diffraction (SCXRD) analysis. Three-dimensional electron diffraction (3D-ED) is a powerful diffraction tool for the structure determination of small crystals. In this work, we successfully carried out the crystalline sponge method by 3D-ED technique using {(ZnI(2))(3)-[2,4,6-tris(4-pyridyl)-1,3,5-triazine](2)·x(guest)}(n) (1-Guest) porous complex nanocrystals. On account of the better diffuse ability of nanocrystals, the time needed for solvent exchange and guest soaking protocols are shortened 50-fold faster versus the original protocol. The crystal structure of the crystalline sponge incorporated with three different guests was fully resolved using a merged dataset. The structure model was identical to previously reported ones using x-ray, showing that the accuracy of the 3D-ED was comparable with SCXRD. The refinement results can also give the precise occupancy of the guest molecule soaked in the porous crystal. This work not only provides a new data collection strategy for crystalline sponge method but also demonstrates the potential of 3D-ED techniques to study host-guest interaction by solving the fine structure of porous material. |
format | Online Article Text |
id | pubmed-8859408 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88594082022-02-22 Crystalline Sponge Method by Three-Dimensional Electron Diffraction Chen, Pohua Liu, Yang Zhang, Chaochao Huang, Fei Liu, Leifeng Sun, Junliang Front Mol Biosci Molecular Biosciences The crystalline sponge method has shown to be a novel strategy for the structure determination of noncrystalline, oily, or trace amount of a compound. A target compound was absorbed and oriented orderly in the pregrown porous crystal for x-ray diffraction analysis. However, the diffusion in the micron-sized crystals is rather difficult. Lots of trial-and-error experiments are needed to optimize the guest-soaking process and to improve data quality. Nanocrystals are better in diffusion, yet it could not conduct a single crystal x-ray diffraction (SCXRD) analysis. Three-dimensional electron diffraction (3D-ED) is a powerful diffraction tool for the structure determination of small crystals. In this work, we successfully carried out the crystalline sponge method by 3D-ED technique using {(ZnI(2))(3)-[2,4,6-tris(4-pyridyl)-1,3,5-triazine](2)·x(guest)}(n) (1-Guest) porous complex nanocrystals. On account of the better diffuse ability of nanocrystals, the time needed for solvent exchange and guest soaking protocols are shortened 50-fold faster versus the original protocol. The crystal structure of the crystalline sponge incorporated with three different guests was fully resolved using a merged dataset. The structure model was identical to previously reported ones using x-ray, showing that the accuracy of the 3D-ED was comparable with SCXRD. The refinement results can also give the precise occupancy of the guest molecule soaked in the porous crystal. This work not only provides a new data collection strategy for crystalline sponge method but also demonstrates the potential of 3D-ED techniques to study host-guest interaction by solving the fine structure of porous material. Frontiers Media S.A. 2022-02-07 /pmc/articles/PMC8859408/ /pubmed/35198600 http://dx.doi.org/10.3389/fmolb.2021.821927 Text en Copyright © 2022 Chen, Liu, Zhang, Huang, Liu and Sun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Chen, Pohua Liu, Yang Zhang, Chaochao Huang, Fei Liu, Leifeng Sun, Junliang Crystalline Sponge Method by Three-Dimensional Electron Diffraction |
title | Crystalline Sponge Method by Three-Dimensional Electron Diffraction |
title_full | Crystalline Sponge Method by Three-Dimensional Electron Diffraction |
title_fullStr | Crystalline Sponge Method by Three-Dimensional Electron Diffraction |
title_full_unstemmed | Crystalline Sponge Method by Three-Dimensional Electron Diffraction |
title_short | Crystalline Sponge Method by Three-Dimensional Electron Diffraction |
title_sort | crystalline sponge method by three-dimensional electron diffraction |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8859408/ https://www.ncbi.nlm.nih.gov/pubmed/35198600 http://dx.doi.org/10.3389/fmolb.2021.821927 |
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