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HPTMT Parallel Operators for High Performance Data Science and Data Engineering
Data-intensive applications are becoming commonplace in all science disciplines. They are comprised of a rich set of sub-domains such as data engineering, deep learning, and machine learning. These applications are built around efficient data abstractions and operators that suit the applications of...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8860100/ https://www.ncbi.nlm.nih.gov/pubmed/35198971 http://dx.doi.org/10.3389/fdata.2021.756041 |
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author | Abeykoon, Vibhatha Kamburugamuve, Supun Widanage, Chathura Perera, Niranda Uyar, Ahmet Kanewala, Thejaka Amila von Laszewski, Gregor Fox, Geoffrey |
author_facet | Abeykoon, Vibhatha Kamburugamuve, Supun Widanage, Chathura Perera, Niranda Uyar, Ahmet Kanewala, Thejaka Amila von Laszewski, Gregor Fox, Geoffrey |
author_sort | Abeykoon, Vibhatha |
collection | PubMed |
description | Data-intensive applications are becoming commonplace in all science disciplines. They are comprised of a rich set of sub-domains such as data engineering, deep learning, and machine learning. These applications are built around efficient data abstractions and operators that suit the applications of different domains. Often lack of a clear definition of data structures and operators in the field has led to other implementations that do not work well together. The HPTMT architecture that we proposed recently, identifies a set of data structures, operators, and an execution model for creating rich data applications that links all aspects of data engineering and data science together efficiently. This paper elaborates and illustrates this architecture using an end-to-end application with deep learning and data engineering parts working together. Our analysis show that the proposed system architecture is better suited for high performance computing environments compared to the current big data processing systems. Furthermore our proposed system emphasizes the importance of efficient compact data structures such as Apache Arrow tabular data representation defined for high performance. Thus the system integration we proposed scales a sequential computation to a distributed computation retaining optimum performance along with highly usable application programming interface. |
format | Online Article Text |
id | pubmed-8860100 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88601002022-02-22 HPTMT Parallel Operators for High Performance Data Science and Data Engineering Abeykoon, Vibhatha Kamburugamuve, Supun Widanage, Chathura Perera, Niranda Uyar, Ahmet Kanewala, Thejaka Amila von Laszewski, Gregor Fox, Geoffrey Front Big Data Big Data Data-intensive applications are becoming commonplace in all science disciplines. They are comprised of a rich set of sub-domains such as data engineering, deep learning, and machine learning. These applications are built around efficient data abstractions and operators that suit the applications of different domains. Often lack of a clear definition of data structures and operators in the field has led to other implementations that do not work well together. The HPTMT architecture that we proposed recently, identifies a set of data structures, operators, and an execution model for creating rich data applications that links all aspects of data engineering and data science together efficiently. This paper elaborates and illustrates this architecture using an end-to-end application with deep learning and data engineering parts working together. Our analysis show that the proposed system architecture is better suited for high performance computing environments compared to the current big data processing systems. Furthermore our proposed system emphasizes the importance of efficient compact data structures such as Apache Arrow tabular data representation defined for high performance. Thus the system integration we proposed scales a sequential computation to a distributed computation retaining optimum performance along with highly usable application programming interface. Frontiers Media S.A. 2022-02-07 /pmc/articles/PMC8860100/ /pubmed/35198971 http://dx.doi.org/10.3389/fdata.2021.756041 Text en Copyright © 2022 Abeykoon, Kamburugamuve, Widanage, Perera, Uyar, Kanewala, von Laszewski and Fox. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Big Data Abeykoon, Vibhatha Kamburugamuve, Supun Widanage, Chathura Perera, Niranda Uyar, Ahmet Kanewala, Thejaka Amila von Laszewski, Gregor Fox, Geoffrey HPTMT Parallel Operators for High Performance Data Science and Data Engineering |
title |
HPTMT Parallel Operators for High Performance Data Science and Data Engineering |
title_full |
HPTMT Parallel Operators for High Performance Data Science and Data Engineering |
title_fullStr |
HPTMT Parallel Operators for High Performance Data Science and Data Engineering |
title_full_unstemmed |
HPTMT Parallel Operators for High Performance Data Science and Data Engineering |
title_short |
HPTMT Parallel Operators for High Performance Data Science and Data Engineering |
title_sort | hptmt parallel operators for high performance data science and data engineering |
topic | Big Data |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8860100/ https://www.ncbi.nlm.nih.gov/pubmed/35198971 http://dx.doi.org/10.3389/fdata.2021.756041 |
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