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Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters
G-quadruplex (G4) structures that can form at guanine-rich genomic sites, including telomeres and gene promoters, are actively involved in genome maintenance, replication, and transcription, through finely tuned interactions with protein networks. In the present study, we identified the intermediate...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8860586/ https://www.ncbi.nlm.nih.gov/pubmed/35100428 http://dx.doi.org/10.1093/nar/gkab1274 |
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author | Ceschi, Silvia Berselli, Michele Cozzaglio, Marta Giantin, Mery Toppo, Stefano Spolaore, Barbara Sissi, Claudia |
author_facet | Ceschi, Silvia Berselli, Michele Cozzaglio, Marta Giantin, Mery Toppo, Stefano Spolaore, Barbara Sissi, Claudia |
author_sort | Ceschi, Silvia |
collection | PubMed |
description | G-quadruplex (G4) structures that can form at guanine-rich genomic sites, including telomeres and gene promoters, are actively involved in genome maintenance, replication, and transcription, through finely tuned interactions with protein networks. In the present study, we identified the intermediate filament protein Vimentin as a binder with nanomolar affinity for those G-rich sequences that give rise to at least two adjacent G4 units, named G4 repeats. This interaction is supported by the N-terminal domains of soluble Vimentin tetramers. The selectivity of Vimentin for G4 repeats versus individual G4s provides an unprecedented result. Based on GO enrichment analysis performed on genes having putative G4 repeats within their core promoters, we suggest that Vimentin recruitment at these sites may contribute to the regulation of gene expression during cell development and migration, possibly by reshaping the local higher-order genome topology, as already reported for lamin B. |
format | Online Article Text |
id | pubmed-8860586 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-88605862022-02-22 Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters Ceschi, Silvia Berselli, Michele Cozzaglio, Marta Giantin, Mery Toppo, Stefano Spolaore, Barbara Sissi, Claudia Nucleic Acids Res Gene regulation, Chromatin and Epigenetics G-quadruplex (G4) structures that can form at guanine-rich genomic sites, including telomeres and gene promoters, are actively involved in genome maintenance, replication, and transcription, through finely tuned interactions with protein networks. In the present study, we identified the intermediate filament protein Vimentin as a binder with nanomolar affinity for those G-rich sequences that give rise to at least two adjacent G4 units, named G4 repeats. This interaction is supported by the N-terminal domains of soluble Vimentin tetramers. The selectivity of Vimentin for G4 repeats versus individual G4s provides an unprecedented result. Based on GO enrichment analysis performed on genes having putative G4 repeats within their core promoters, we suggest that Vimentin recruitment at these sites may contribute to the regulation of gene expression during cell development and migration, possibly by reshaping the local higher-order genome topology, as already reported for lamin B. Oxford University Press 2022-01-31 /pmc/articles/PMC8860586/ /pubmed/35100428 http://dx.doi.org/10.1093/nar/gkab1274 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Gene regulation, Chromatin and Epigenetics Ceschi, Silvia Berselli, Michele Cozzaglio, Marta Giantin, Mery Toppo, Stefano Spolaore, Barbara Sissi, Claudia Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters |
title | Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters |
title_full | Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters |
title_fullStr | Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters |
title_full_unstemmed | Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters |
title_short | Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters |
title_sort | vimentin binds to g-quadruplex repeats found at telomeres and gene promoters |
topic | Gene regulation, Chromatin and Epigenetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8860586/ https://www.ncbi.nlm.nih.gov/pubmed/35100428 http://dx.doi.org/10.1093/nar/gkab1274 |
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