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Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters

G-quadruplex (G4) structures that can form at guanine-rich genomic sites, including telomeres and gene promoters, are actively involved in genome maintenance, replication, and transcription, through finely tuned interactions with protein networks. In the present study, we identified the intermediate...

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Autores principales: Ceschi, Silvia, Berselli, Michele, Cozzaglio, Marta, Giantin, Mery, Toppo, Stefano, Spolaore, Barbara, Sissi, Claudia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8860586/
https://www.ncbi.nlm.nih.gov/pubmed/35100428
http://dx.doi.org/10.1093/nar/gkab1274
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author Ceschi, Silvia
Berselli, Michele
Cozzaglio, Marta
Giantin, Mery
Toppo, Stefano
Spolaore, Barbara
Sissi, Claudia
author_facet Ceschi, Silvia
Berselli, Michele
Cozzaglio, Marta
Giantin, Mery
Toppo, Stefano
Spolaore, Barbara
Sissi, Claudia
author_sort Ceschi, Silvia
collection PubMed
description G-quadruplex (G4) structures that can form at guanine-rich genomic sites, including telomeres and gene promoters, are actively involved in genome maintenance, replication, and transcription, through finely tuned interactions with protein networks. In the present study, we identified the intermediate filament protein Vimentin as a binder with nanomolar affinity for those G-rich sequences that give rise to at least two adjacent G4 units, named G4 repeats. This interaction is supported by the N-terminal domains of soluble Vimentin tetramers. The selectivity of Vimentin for G4 repeats versus individual G4s provides an unprecedented result. Based on GO enrichment analysis performed on genes having putative G4 repeats within their core promoters, we suggest that Vimentin recruitment at these sites may contribute to the regulation of gene expression during cell development and migration, possibly by reshaping the local higher-order genome topology, as already reported for lamin B.
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spelling pubmed-88605862022-02-22 Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters Ceschi, Silvia Berselli, Michele Cozzaglio, Marta Giantin, Mery Toppo, Stefano Spolaore, Barbara Sissi, Claudia Nucleic Acids Res Gene regulation, Chromatin and Epigenetics G-quadruplex (G4) structures that can form at guanine-rich genomic sites, including telomeres and gene promoters, are actively involved in genome maintenance, replication, and transcription, through finely tuned interactions with protein networks. In the present study, we identified the intermediate filament protein Vimentin as a binder with nanomolar affinity for those G-rich sequences that give rise to at least two adjacent G4 units, named G4 repeats. This interaction is supported by the N-terminal domains of soluble Vimentin tetramers. The selectivity of Vimentin for G4 repeats versus individual G4s provides an unprecedented result. Based on GO enrichment analysis performed on genes having putative G4 repeats within their core promoters, we suggest that Vimentin recruitment at these sites may contribute to the regulation of gene expression during cell development and migration, possibly by reshaping the local higher-order genome topology, as already reported for lamin B. Oxford University Press 2022-01-31 /pmc/articles/PMC8860586/ /pubmed/35100428 http://dx.doi.org/10.1093/nar/gkab1274 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Gene regulation, Chromatin and Epigenetics
Ceschi, Silvia
Berselli, Michele
Cozzaglio, Marta
Giantin, Mery
Toppo, Stefano
Spolaore, Barbara
Sissi, Claudia
Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters
title Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters
title_full Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters
title_fullStr Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters
title_full_unstemmed Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters
title_short Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters
title_sort vimentin binds to g-quadruplex repeats found at telomeres and gene promoters
topic Gene regulation, Chromatin and Epigenetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8860586/
https://www.ncbi.nlm.nih.gov/pubmed/35100428
http://dx.doi.org/10.1093/nar/gkab1274
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