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Spatiotemporal dynamics in spiking recurrent neural networks using modified-full-FORCE on EEG signals

Methods on modelling the human brain as a Complex System have increased remarkably in the literature as researchers seek to understand the underlying foundations behind cognition, behaviour, and perception. Computational methods, especially Graph Theory-based methods, have recently contributed signi...

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Autores principales: Ioannides, Georgios, Kourouklides, Ioannis, Astolfi, Alessandro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861015/
https://www.ncbi.nlm.nih.gov/pubmed/35190579
http://dx.doi.org/10.1038/s41598-022-06573-1
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author Ioannides, Georgios
Kourouklides, Ioannis
Astolfi, Alessandro
author_facet Ioannides, Georgios
Kourouklides, Ioannis
Astolfi, Alessandro
author_sort Ioannides, Georgios
collection PubMed
description Methods on modelling the human brain as a Complex System have increased remarkably in the literature as researchers seek to understand the underlying foundations behind cognition, behaviour, and perception. Computational methods, especially Graph Theory-based methods, have recently contributed significantly in understanding the wiring connectivity of the brain, modelling it as a set of nodes connected by edges. Therefore, the brain’s spatiotemporal dynamics can be holistically studied by considering a network, which consists of many neurons, represented by nodes. Various models have been proposed for modelling such neurons. A recently proposed method in training such networks, called full-Force, produces networks that perform tasks with fewer neurons and greater noise robustness than previous least-squares approaches (i.e. FORCE method). In this paper, the first direct applicability of a variant of the full-Force method to biologically-motivated Spiking RNNs (SRNNs) is demonstrated. The SRNN is a graph consisting of modules. Each module is modelled as a Small-World Network (SWN), which is a specific type of a biologically-plausible graph. So, the first direct applicability of a variant of the full-Force method to modular SWNs is demonstrated, evaluated through regression and information theoretic metrics. For the first time, the aforementioned method is applied to spiking neuron models and trained on various real-life Electroencephalography (EEG) signals. To the best of the authors’ knowledge, all the contributions of this paper are novel. Results show that trained SRNNs match EEG signals almost perfectly, while network dynamics can mimic the target dynamics. This demonstrates that the holistic setup of the network model and the neuron model which are both more biologically plausible than previous work, can be tuned into real biological signal dynamics.
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spelling pubmed-88610152022-02-22 Spatiotemporal dynamics in spiking recurrent neural networks using modified-full-FORCE on EEG signals Ioannides, Georgios Kourouklides, Ioannis Astolfi, Alessandro Sci Rep Article Methods on modelling the human brain as a Complex System have increased remarkably in the literature as researchers seek to understand the underlying foundations behind cognition, behaviour, and perception. Computational methods, especially Graph Theory-based methods, have recently contributed significantly in understanding the wiring connectivity of the brain, modelling it as a set of nodes connected by edges. Therefore, the brain’s spatiotemporal dynamics can be holistically studied by considering a network, which consists of many neurons, represented by nodes. Various models have been proposed for modelling such neurons. A recently proposed method in training such networks, called full-Force, produces networks that perform tasks with fewer neurons and greater noise robustness than previous least-squares approaches (i.e. FORCE method). In this paper, the first direct applicability of a variant of the full-Force method to biologically-motivated Spiking RNNs (SRNNs) is demonstrated. The SRNN is a graph consisting of modules. Each module is modelled as a Small-World Network (SWN), which is a specific type of a biologically-plausible graph. So, the first direct applicability of a variant of the full-Force method to modular SWNs is demonstrated, evaluated through regression and information theoretic metrics. For the first time, the aforementioned method is applied to spiking neuron models and trained on various real-life Electroencephalography (EEG) signals. To the best of the authors’ knowledge, all the contributions of this paper are novel. Results show that trained SRNNs match EEG signals almost perfectly, while network dynamics can mimic the target dynamics. This demonstrates that the holistic setup of the network model and the neuron model which are both more biologically plausible than previous work, can be tuned into real biological signal dynamics. Nature Publishing Group UK 2022-02-21 /pmc/articles/PMC8861015/ /pubmed/35190579 http://dx.doi.org/10.1038/s41598-022-06573-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ioannides, Georgios
Kourouklides, Ioannis
Astolfi, Alessandro
Spatiotemporal dynamics in spiking recurrent neural networks using modified-full-FORCE on EEG signals
title Spatiotemporal dynamics in spiking recurrent neural networks using modified-full-FORCE on EEG signals
title_full Spatiotemporal dynamics in spiking recurrent neural networks using modified-full-FORCE on EEG signals
title_fullStr Spatiotemporal dynamics in spiking recurrent neural networks using modified-full-FORCE on EEG signals
title_full_unstemmed Spatiotemporal dynamics in spiking recurrent neural networks using modified-full-FORCE on EEG signals
title_short Spatiotemporal dynamics in spiking recurrent neural networks using modified-full-FORCE on EEG signals
title_sort spatiotemporal dynamics in spiking recurrent neural networks using modified-full-force on eeg signals
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861015/
https://www.ncbi.nlm.nih.gov/pubmed/35190579
http://dx.doi.org/10.1038/s41598-022-06573-1
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