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Urinary sediment CCL5 messenger RNA as a potential prognostic biomarker of diabetic nephropathy
BACKGROUND: Urinary sediment messenger RNAs (mRNAs) have been shown as novel biomarkers of kidney disease. We aimed to identify targeted urinary mRNAs in diabetic nephropathy (DN) based on bioinformatics analysis and clinical validation. METHODS: Microarray studies of DN were searched in the GEO dat...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8862108/ https://www.ncbi.nlm.nih.gov/pubmed/35211307 http://dx.doi.org/10.1093/ckj/sfab186 |
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author | Feng, Song-Tao Yang, Yang Yang, Jin-Fei Gao, Yue-Ming Cao, Jing-Yuan Li, Zuo-Lin Tang, Tao-Tao Lv, Lin-Li Wang, Bin Wen, Yi Sun, Lin Xing, Guo-Lan Liu, Bi-Cheng |
author_facet | Feng, Song-Tao Yang, Yang Yang, Jin-Fei Gao, Yue-Ming Cao, Jing-Yuan Li, Zuo-Lin Tang, Tao-Tao Lv, Lin-Li Wang, Bin Wen, Yi Sun, Lin Xing, Guo-Lan Liu, Bi-Cheng |
author_sort | Feng, Song-Tao |
collection | PubMed |
description | BACKGROUND: Urinary sediment messenger RNAs (mRNAs) have been shown as novel biomarkers of kidney disease. We aimed to identify targeted urinary mRNAs in diabetic nephropathy (DN) based on bioinformatics analysis and clinical validation. METHODS: Microarray studies of DN were searched in the GEO database and Nephroseq platform. Gene modules negatively correlated with estimated glomerular filtration rate (eGFR) were identified by informatics methods. Hub genes were screened within the selected modules. In validation cohorts, a quantitative polymerase chain reaction assay was used to compare the expression levels of candidate mRNAs. Patients with renal biopsy–confirmed DN were then followed up for a median time of 21 months. End-stage renal disease (ESRD) was defined as the primary endpoint. Multivariate Cox proportional hazards regression was developed to evaluate the prognostic values of candidate mRNAs. RESULTS: Bioinformatics analysis revealed four chemokines (CCL5, CXCL1, CXLC6 and CXCL12) as candidate mRNAs negatively correlated with eGFR, of which CCL5 and CXCL1 mRNA levels were upregulated in the urinary sediment of patients with DN. In addition, urinary sediment mRNA of CXCL1 was negatively correlated with eGFR (r = −0.2275, P = 0.0301) and CCL5 level was negatively correlated with eGFR (r = −0.4388, P < 0.0001) and positively correlated with urinary albumin:creatinine ratio (r = 0.2693, P = 0.0098); also, CCL5 and CXCL1 were upregulated in patients with severe renal interstitial fibrosis. Urinary sediment CCL5 mRNA was an independent predictor of ESRD [hazard ratio 1.350 (95% confidence interval 1.045–1.745)]. CONCLUSIONS: Urinary sediment CCL5 and CXCL1 mRNAs were upregulated in DN patients and associated with a decline in renal function and degree of renal interstitial fibrosis. Urinary sediment CCL5 mRNA could be used as a potential prognostic biomarker of DN. |
format | Online Article Text |
id | pubmed-8862108 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-88621082022-02-23 Urinary sediment CCL5 messenger RNA as a potential prognostic biomarker of diabetic nephropathy Feng, Song-Tao Yang, Yang Yang, Jin-Fei Gao, Yue-Ming Cao, Jing-Yuan Li, Zuo-Lin Tang, Tao-Tao Lv, Lin-Li Wang, Bin Wen, Yi Sun, Lin Xing, Guo-Lan Liu, Bi-Cheng Clin Kidney J Original Article BACKGROUND: Urinary sediment messenger RNAs (mRNAs) have been shown as novel biomarkers of kidney disease. We aimed to identify targeted urinary mRNAs in diabetic nephropathy (DN) based on bioinformatics analysis and clinical validation. METHODS: Microarray studies of DN were searched in the GEO database and Nephroseq platform. Gene modules negatively correlated with estimated glomerular filtration rate (eGFR) were identified by informatics methods. Hub genes were screened within the selected modules. In validation cohorts, a quantitative polymerase chain reaction assay was used to compare the expression levels of candidate mRNAs. Patients with renal biopsy–confirmed DN were then followed up for a median time of 21 months. End-stage renal disease (ESRD) was defined as the primary endpoint. Multivariate Cox proportional hazards regression was developed to evaluate the prognostic values of candidate mRNAs. RESULTS: Bioinformatics analysis revealed four chemokines (CCL5, CXCL1, CXLC6 and CXCL12) as candidate mRNAs negatively correlated with eGFR, of which CCL5 and CXCL1 mRNA levels were upregulated in the urinary sediment of patients with DN. In addition, urinary sediment mRNA of CXCL1 was negatively correlated with eGFR (r = −0.2275, P = 0.0301) and CCL5 level was negatively correlated with eGFR (r = −0.4388, P < 0.0001) and positively correlated with urinary albumin:creatinine ratio (r = 0.2693, P = 0.0098); also, CCL5 and CXCL1 were upregulated in patients with severe renal interstitial fibrosis. Urinary sediment CCL5 mRNA was an independent predictor of ESRD [hazard ratio 1.350 (95% confidence interval 1.045–1.745)]. CONCLUSIONS: Urinary sediment CCL5 and CXCL1 mRNAs were upregulated in DN patients and associated with a decline in renal function and degree of renal interstitial fibrosis. Urinary sediment CCL5 mRNA could be used as a potential prognostic biomarker of DN. Oxford University Press 2021-09-28 /pmc/articles/PMC8862108/ /pubmed/35211307 http://dx.doi.org/10.1093/ckj/sfab186 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the ERA. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Original Article Feng, Song-Tao Yang, Yang Yang, Jin-Fei Gao, Yue-Ming Cao, Jing-Yuan Li, Zuo-Lin Tang, Tao-Tao Lv, Lin-Li Wang, Bin Wen, Yi Sun, Lin Xing, Guo-Lan Liu, Bi-Cheng Urinary sediment CCL5 messenger RNA as a potential prognostic biomarker of diabetic nephropathy |
title | Urinary sediment CCL5 messenger RNA as a potential prognostic biomarker of diabetic nephropathy |
title_full | Urinary sediment CCL5 messenger RNA as a potential prognostic biomarker of diabetic nephropathy |
title_fullStr | Urinary sediment CCL5 messenger RNA as a potential prognostic biomarker of diabetic nephropathy |
title_full_unstemmed | Urinary sediment CCL5 messenger RNA as a potential prognostic biomarker of diabetic nephropathy |
title_short | Urinary sediment CCL5 messenger RNA as a potential prognostic biomarker of diabetic nephropathy |
title_sort | urinary sediment ccl5 messenger rna as a potential prognostic biomarker of diabetic nephropathy |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8862108/ https://www.ncbi.nlm.nih.gov/pubmed/35211307 http://dx.doi.org/10.1093/ckj/sfab186 |
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