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STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity

BACKGROUND: Modern chemical toxicology is facing a growing need to Reduce, Refine, and Replace animal tests (Russell 1959) for hazard identification. The most common type of animal assays for acute toxicity assessment of chemicals used as pesticides, pharmaceuticals, or in cosmetic products is known...

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Autores principales: Borba, Joyce V.B., Alves, Vinicius M., Braga, Rodolpho C., Korn, Daniel R., Overdahl, Kirsten, Silva, Arthur C., Hall, Steven U.S., Overdahl, Erik, Kleinstreuer, Nicole, Strickland, Judy, Allen, David, Andrade, Carolina Horta, Muratov, Eugene N., Tropsha, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Environmental Health Perspectives 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8863177/
https://www.ncbi.nlm.nih.gov/pubmed/35192406
http://dx.doi.org/10.1289/EHP9341
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author Borba, Joyce V.B.
Alves, Vinicius M.
Braga, Rodolpho C.
Korn, Daniel R.
Overdahl, Kirsten
Silva, Arthur C.
Hall, Steven U.S.
Overdahl, Erik
Kleinstreuer, Nicole
Strickland, Judy
Allen, David
Andrade, Carolina Horta
Muratov, Eugene N.
Tropsha, Alexander
author_facet Borba, Joyce V.B.
Alves, Vinicius M.
Braga, Rodolpho C.
Korn, Daniel R.
Overdahl, Kirsten
Silva, Arthur C.
Hall, Steven U.S.
Overdahl, Erik
Kleinstreuer, Nicole
Strickland, Judy
Allen, David
Andrade, Carolina Horta
Muratov, Eugene N.
Tropsha, Alexander
author_sort Borba, Joyce V.B.
collection PubMed
description BACKGROUND: Modern chemical toxicology is facing a growing need to Reduce, Refine, and Replace animal tests (Russell 1959) for hazard identification. The most common type of animal assays for acute toxicity assessment of chemicals used as pesticides, pharmaceuticals, or in cosmetic products is known as a “6-pack” battery of tests, including three topical (skin sensitization, skin irritation and corrosion, and eye irritation and corrosion) and three systemic (acute oral toxicity, acute inhalation toxicity, and acute dermal toxicity) end points. METHODS: We compiled, curated, and integrated, to the best of our knowledge, the largest publicly available data sets and developed an ensemble of quantitative structure–activity relationship (QSAR) models for all six end points. All models were validated according to the Organisation for Economic Co-operation and Development (OECD) QSAR principles, using data on compounds not included in the training sets. RESULTS: In addition to high internal accuracy assessed by cross-validation, all models demonstrated an external correct classification rate ranging from 70% to 77%. We established a publicly accessible Systemic and Topical chemical Toxicity (STopTox) web portal (https://stoptox.mml.unc.edu/) integrating all developed models for 6-pack assays. CONCLUSIONS: We developed STopTox, a comprehensive collection of computational models that can be used as an alternative to in vivo 6-pack tests for predicting the toxicity hazard of small organic molecules. Models were established following the best practices for the development and validation of QSAR models. Scientists and regulators can use the STopTox portal to identify putative toxicants or nontoxicants in chemical libraries of interest. https://doi.org/10.1289/EHP9341
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spelling pubmed-88631772022-02-24 STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity Borba, Joyce V.B. Alves, Vinicius M. Braga, Rodolpho C. Korn, Daniel R. Overdahl, Kirsten Silva, Arthur C. Hall, Steven U.S. Overdahl, Erik Kleinstreuer, Nicole Strickland, Judy Allen, David Andrade, Carolina Horta Muratov, Eugene N. Tropsha, Alexander Environ Health Perspect Research BACKGROUND: Modern chemical toxicology is facing a growing need to Reduce, Refine, and Replace animal tests (Russell 1959) for hazard identification. The most common type of animal assays for acute toxicity assessment of chemicals used as pesticides, pharmaceuticals, or in cosmetic products is known as a “6-pack” battery of tests, including three topical (skin sensitization, skin irritation and corrosion, and eye irritation and corrosion) and three systemic (acute oral toxicity, acute inhalation toxicity, and acute dermal toxicity) end points. METHODS: We compiled, curated, and integrated, to the best of our knowledge, the largest publicly available data sets and developed an ensemble of quantitative structure–activity relationship (QSAR) models for all six end points. All models were validated according to the Organisation for Economic Co-operation and Development (OECD) QSAR principles, using data on compounds not included in the training sets. RESULTS: In addition to high internal accuracy assessed by cross-validation, all models demonstrated an external correct classification rate ranging from 70% to 77%. We established a publicly accessible Systemic and Topical chemical Toxicity (STopTox) web portal (https://stoptox.mml.unc.edu/) integrating all developed models for 6-pack assays. CONCLUSIONS: We developed STopTox, a comprehensive collection of computational models that can be used as an alternative to in vivo 6-pack tests for predicting the toxicity hazard of small organic molecules. Models were established following the best practices for the development and validation of QSAR models. Scientists and regulators can use the STopTox portal to identify putative toxicants or nontoxicants in chemical libraries of interest. https://doi.org/10.1289/EHP9341 Environmental Health Perspectives 2022-02-22 /pmc/articles/PMC8863177/ /pubmed/35192406 http://dx.doi.org/10.1289/EHP9341 Text en https://ehp.niehs.nih.gov/about-ehp/licenseEHP is an open-access journal published with support from the National Institute of Environmental Health Sciences, National Institutes of Health. All content is public domain unless otherwise noted.
spellingShingle Research
Borba, Joyce V.B.
Alves, Vinicius M.
Braga, Rodolpho C.
Korn, Daniel R.
Overdahl, Kirsten
Silva, Arthur C.
Hall, Steven U.S.
Overdahl, Erik
Kleinstreuer, Nicole
Strickland, Judy
Allen, David
Andrade, Carolina Horta
Muratov, Eugene N.
Tropsha, Alexander
STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity
title STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity
title_full STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity
title_fullStr STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity
title_full_unstemmed STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity
title_short STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity
title_sort stoptox: an in silico alternative to animal testing for acute systemic and topical toxicity
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8863177/
https://www.ncbi.nlm.nih.gov/pubmed/35192406
http://dx.doi.org/10.1289/EHP9341
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