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Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses

Chemical sensing is vital to the survival of all organisms. Bacterial chemotaxis is conducted by multiple receptors that sense chemicals to regulate a single signalling system controlling the transition between the direction (clockwise vs. counterclockwise) of flagellar rotation. Such an integrated...

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Autores principales: Tanaka, Hiroto, Kazuta, Yasuaki, Naruse, Yasushi, Tominari, Yukihiro, Umehara, Hiroaki, Sowa, Yoshiyuki, Sagawa, Takashi, Oiwa, Kazuhiro, Okada, Masato, Kawagishi, Ikuro, Kojima, Hiroaki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8863824/
https://www.ncbi.nlm.nih.gov/pubmed/35194068
http://dx.doi.org/10.1038/s41598-022-06732-4
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author Tanaka, Hiroto
Kazuta, Yasuaki
Naruse, Yasushi
Tominari, Yukihiro
Umehara, Hiroaki
Sowa, Yoshiyuki
Sagawa, Takashi
Oiwa, Kazuhiro
Okada, Masato
Kawagishi, Ikuro
Kojima, Hiroaki
author_facet Tanaka, Hiroto
Kazuta, Yasuaki
Naruse, Yasushi
Tominari, Yukihiro
Umehara, Hiroaki
Sowa, Yoshiyuki
Sagawa, Takashi
Oiwa, Kazuhiro
Okada, Masato
Kawagishi, Ikuro
Kojima, Hiroaki
author_sort Tanaka, Hiroto
collection PubMed
description Chemical sensing is vital to the survival of all organisms. Bacterial chemotaxis is conducted by multiple receptors that sense chemicals to regulate a single signalling system controlling the transition between the direction (clockwise vs. counterclockwise) of flagellar rotation. Such an integrated system seems better suited to judge chemicals as either favourable or unfavourable, but not for identification purposes though differences in their affinities to the receptors may cause difference in response strength. Here, an experimental setup was developed to monitor behaviours of multiple cells stimulated simultaneously as well as a statistical framework based on Bayesian inferences. Although responses of individual cells varied substantially, ensemble averaging of the time courses seemed characteristic to attractant species, indicating we can extract information of input chemical species from responses of the bacterium. Furthermore, two similar, but distinct, beverages elicited attractant responses of cells with profiles distinguishable with the Bayesian procedure. These results provide a basis for novel bio-inspired sensors that could be used with other cell types to sense wider ranges of chemicals.
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spelling pubmed-88638242022-02-23 Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses Tanaka, Hiroto Kazuta, Yasuaki Naruse, Yasushi Tominari, Yukihiro Umehara, Hiroaki Sowa, Yoshiyuki Sagawa, Takashi Oiwa, Kazuhiro Okada, Masato Kawagishi, Ikuro Kojima, Hiroaki Sci Rep Article Chemical sensing is vital to the survival of all organisms. Bacterial chemotaxis is conducted by multiple receptors that sense chemicals to regulate a single signalling system controlling the transition between the direction (clockwise vs. counterclockwise) of flagellar rotation. Such an integrated system seems better suited to judge chemicals as either favourable or unfavourable, but not for identification purposes though differences in their affinities to the receptors may cause difference in response strength. Here, an experimental setup was developed to monitor behaviours of multiple cells stimulated simultaneously as well as a statistical framework based on Bayesian inferences. Although responses of individual cells varied substantially, ensemble averaging of the time courses seemed characteristic to attractant species, indicating we can extract information of input chemical species from responses of the bacterium. Furthermore, two similar, but distinct, beverages elicited attractant responses of cells with profiles distinguishable with the Bayesian procedure. These results provide a basis for novel bio-inspired sensors that could be used with other cell types to sense wider ranges of chemicals. Nature Publishing Group UK 2022-02-22 /pmc/articles/PMC8863824/ /pubmed/35194068 http://dx.doi.org/10.1038/s41598-022-06732-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Tanaka, Hiroto
Kazuta, Yasuaki
Naruse, Yasushi
Tominari, Yukihiro
Umehara, Hiroaki
Sowa, Yoshiyuki
Sagawa, Takashi
Oiwa, Kazuhiro
Okada, Masato
Kawagishi, Ikuro
Kojima, Hiroaki
Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses
title Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses
title_full Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses
title_fullStr Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses
title_full_unstemmed Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses
title_short Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses
title_sort bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8863824/
https://www.ncbi.nlm.nih.gov/pubmed/35194068
http://dx.doi.org/10.1038/s41598-022-06732-4
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