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Construction and Verification of a Combined Hypoxia and Immune Index for Clear Cell Renal Cell Carcinoma
Clear cell renal cell carcinoma (ccRCC) is one of the most aggressive malignancies in humans. Hypoxia-related genes are now recognized as a reflection of poor prognosis in cancer patients with cancer. Meanwhile, immune-related genes play an important role in the occurrence and progression of ccRCC....
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8863964/ https://www.ncbi.nlm.nih.gov/pubmed/35222525 http://dx.doi.org/10.3389/fgene.2022.711142 |
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author | Wang, Bin Liu, Lixiao Wu, Jinting Mao, Xiaolu Fang, Zhen Chen, Yingyu Li, Wenfeng |
author_facet | Wang, Bin Liu, Lixiao Wu, Jinting Mao, Xiaolu Fang, Zhen Chen, Yingyu Li, Wenfeng |
author_sort | Wang, Bin |
collection | PubMed |
description | Clear cell renal cell carcinoma (ccRCC) is one of the most aggressive malignancies in humans. Hypoxia-related genes are now recognized as a reflection of poor prognosis in cancer patients with cancer. Meanwhile, immune-related genes play an important role in the occurrence and progression of ccRCC. Nevertheless, reliable prognostic indicators based on hypoxia and immune status have not been well established in ccRCC. The aims of this study were to develop a new gene signature model using bioinformatics and open databases and to validate its prognostic value in ccRCC. The data used for the model structure can be accessed from The Cancer Genome Atlas database. Univariate, least absolute shrinkage and selection operator (LASSO), and multivariate Cox regression analyses were used to identify the hypoxia- and immune-related genes associated with prognostic risk, which were used to develop a characteristic model of prognostic risk. Kaplan-Meier and receiver-operating characteristic curve analyses were performed as well as independent prognostic factor analyses and correlation analyses of clinical characteristics in both the training and validation cohorts. In addition, differences in tumor immune cell infiltrates were compared between the high and low risk groups. Overall, 30 hypoxia- and immune-related genes were identified, and five hypoxia- and immune-related genes (EPO, PLAUR, TEK, TGFA, TGFB1) were ultimately selected. Survival analysis showed that the high-risk score on the hypoxia- and immune-related gene signature was significantly associated with adverse survival outcomes. Furthermore, clinical ccRCC samples from our medical center were used to validate the differential expression of the five genes in tumor tissue compared to normal tissue through quantitative real-time polymerase chain reaction (qRT-PCR). However, more clinical trials are needed to confirm these results, and future experimental studies must verify the potential mechanism behind the predictive value of the hypoxia- and immune-related gene signature. |
format | Online Article Text |
id | pubmed-8863964 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88639642022-02-24 Construction and Verification of a Combined Hypoxia and Immune Index for Clear Cell Renal Cell Carcinoma Wang, Bin Liu, Lixiao Wu, Jinting Mao, Xiaolu Fang, Zhen Chen, Yingyu Li, Wenfeng Front Genet Genetics Clear cell renal cell carcinoma (ccRCC) is one of the most aggressive malignancies in humans. Hypoxia-related genes are now recognized as a reflection of poor prognosis in cancer patients with cancer. Meanwhile, immune-related genes play an important role in the occurrence and progression of ccRCC. Nevertheless, reliable prognostic indicators based on hypoxia and immune status have not been well established in ccRCC. The aims of this study were to develop a new gene signature model using bioinformatics and open databases and to validate its prognostic value in ccRCC. The data used for the model structure can be accessed from The Cancer Genome Atlas database. Univariate, least absolute shrinkage and selection operator (LASSO), and multivariate Cox regression analyses were used to identify the hypoxia- and immune-related genes associated with prognostic risk, which were used to develop a characteristic model of prognostic risk. Kaplan-Meier and receiver-operating characteristic curve analyses were performed as well as independent prognostic factor analyses and correlation analyses of clinical characteristics in both the training and validation cohorts. In addition, differences in tumor immune cell infiltrates were compared between the high and low risk groups. Overall, 30 hypoxia- and immune-related genes were identified, and five hypoxia- and immune-related genes (EPO, PLAUR, TEK, TGFA, TGFB1) were ultimately selected. Survival analysis showed that the high-risk score on the hypoxia- and immune-related gene signature was significantly associated with adverse survival outcomes. Furthermore, clinical ccRCC samples from our medical center were used to validate the differential expression of the five genes in tumor tissue compared to normal tissue through quantitative real-time polymerase chain reaction (qRT-PCR). However, more clinical trials are needed to confirm these results, and future experimental studies must verify the potential mechanism behind the predictive value of the hypoxia- and immune-related gene signature. Frontiers Media S.A. 2022-02-09 /pmc/articles/PMC8863964/ /pubmed/35222525 http://dx.doi.org/10.3389/fgene.2022.711142 Text en Copyright © 2022 Wang, Liu, Wu, Mao, Fang, Chen and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Wang, Bin Liu, Lixiao Wu, Jinting Mao, Xiaolu Fang, Zhen Chen, Yingyu Li, Wenfeng Construction and Verification of a Combined Hypoxia and Immune Index for Clear Cell Renal Cell Carcinoma |
title | Construction and Verification of a Combined Hypoxia and Immune Index for Clear Cell Renal Cell Carcinoma |
title_full | Construction and Verification of a Combined Hypoxia and Immune Index for Clear Cell Renal Cell Carcinoma |
title_fullStr | Construction and Verification of a Combined Hypoxia and Immune Index for Clear Cell Renal Cell Carcinoma |
title_full_unstemmed | Construction and Verification of a Combined Hypoxia and Immune Index for Clear Cell Renal Cell Carcinoma |
title_short | Construction and Verification of a Combined Hypoxia and Immune Index for Clear Cell Renal Cell Carcinoma |
title_sort | construction and verification of a combined hypoxia and immune index for clear cell renal cell carcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8863964/ https://www.ncbi.nlm.nih.gov/pubmed/35222525 http://dx.doi.org/10.3389/fgene.2022.711142 |
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