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Spatio-temporal mixture process estimation to detect dynamical changes in population
Population monitoring is a challenge in many areas such as public health and ecology. We propose a method to model and monitor population distributions over space and time, in order to build an alert system for spatio-temporal data changes. Assuming that mixture models can correctly model population...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8864896/ https://www.ncbi.nlm.nih.gov/pubmed/35346441 http://dx.doi.org/10.1016/j.artmed.2022.102258 |
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author | Pruilh, Solange Jannot, Anne-Sophie Allassonnière, Stéphanie |
author_facet | Pruilh, Solange Jannot, Anne-Sophie Allassonnière, Stéphanie |
author_sort | Pruilh, Solange |
collection | PubMed |
description | Population monitoring is a challenge in many areas such as public health and ecology. We propose a method to model and monitor population distributions over space and time, in order to build an alert system for spatio-temporal data changes. Assuming that mixture models can correctly model populations, we propose a new version of the Expectation-Maximization (EM) algorithm to better estimate the number of clusters and their parameters at the same time. This algorithm is compared to existing methods on several simulated datasets. We then combine the algorithm with a temporal statistical model, allowing for the detection of dynamical changes in population distributions, and call the result a spatio-temporal mixture process (STMP). We test STMPs on synthetic data, and consider several different behaviors of the distributions, to fit this process. Finally, we validate STMPs on a real data set of positive diagnosed patients to coronavirus disease 2019. We show that our pipeline correctly models evolving real data and detects epidemic changes. |
format | Online Article Text |
id | pubmed-8864896 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88648962022-02-24 Spatio-temporal mixture process estimation to detect dynamical changes in population Pruilh, Solange Jannot, Anne-Sophie Allassonnière, Stéphanie Artif Intell Med Article Population monitoring is a challenge in many areas such as public health and ecology. We propose a method to model and monitor population distributions over space and time, in order to build an alert system for spatio-temporal data changes. Assuming that mixture models can correctly model populations, we propose a new version of the Expectation-Maximization (EM) algorithm to better estimate the number of clusters and their parameters at the same time. This algorithm is compared to existing methods on several simulated datasets. We then combine the algorithm with a temporal statistical model, allowing for the detection of dynamical changes in population distributions, and call the result a spatio-temporal mixture process (STMP). We test STMPs on synthetic data, and consider several different behaviors of the distributions, to fit this process. Finally, we validate STMPs on a real data set of positive diagnosed patients to coronavirus disease 2019. We show that our pipeline correctly models evolving real data and detects epidemic changes. Elsevier B.V. 2022-04 2022-02-23 /pmc/articles/PMC8864896/ /pubmed/35346441 http://dx.doi.org/10.1016/j.artmed.2022.102258 Text en © 2022 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Pruilh, Solange Jannot, Anne-Sophie Allassonnière, Stéphanie Spatio-temporal mixture process estimation to detect dynamical changes in population |
title | Spatio-temporal mixture process estimation to detect dynamical changes in population |
title_full | Spatio-temporal mixture process estimation to detect dynamical changes in population |
title_fullStr | Spatio-temporal mixture process estimation to detect dynamical changes in population |
title_full_unstemmed | Spatio-temporal mixture process estimation to detect dynamical changes in population |
title_short | Spatio-temporal mixture process estimation to detect dynamical changes in population |
title_sort | spatio-temporal mixture process estimation to detect dynamical changes in population |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8864896/ https://www.ncbi.nlm.nih.gov/pubmed/35346441 http://dx.doi.org/10.1016/j.artmed.2022.102258 |
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