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The complete chloroplast genome sequence of Ficus concinna (Moraceae) from Sichuan province
Ficus concinna is an important contributor to tropical forest biodiversity. Here, we provide the first report of the complete F. concinna chloroplast genome, thereby providing a basis for subsequent phylogenetic analyses of the Moraceae family. The final assembled chloroplast genome was 160,331 bp i...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8865104/ https://www.ncbi.nlm.nih.gov/pubmed/35224193 http://dx.doi.org/10.1080/23802359.2022.2036649 |
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author | Zhang, Pei-hua Hou, Zhu |
author_facet | Zhang, Pei-hua Hou, Zhu |
author_sort | Zhang, Pei-hua |
collection | PubMed |
description | Ficus concinna is an important contributor to tropical forest biodiversity. Here, we provide the first report of the complete F. concinna chloroplast genome, thereby providing a basis for subsequent phylogenetic analyses of the Moraceae family. The final assembled chloroplast genome was 160,331 bp in size and included a 20,018 bp long small single-copy (SSC) region, an 88,541 bp long large single-copy (LSC) region, and two 25,886 bp inverted repeats (IRs). The total content of GC for this chloroplast genome was 42.6%, with respective frequencies of 33.6%, 35.9%, and 28.9% in the SSC, LSC, and IR regions, accordingly. Overall, the chloroplast genome was found to encode 131 genes, comprising 37 tRNAs, 86 protein-coding genes, and 8 rRNAs. Phylogenetic analyses revealed a close relationship between F. concinna and Ficus altissima, consistent with prior research results. Together, these data provide valuable insights regarding the evolution and conserved genetic features of F. concinna. |
format | Online Article Text |
id | pubmed-8865104 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88651042022-02-24 The complete chloroplast genome sequence of Ficus concinna (Moraceae) from Sichuan province Zhang, Pei-hua Hou, Zhu Mitochondrial DNA B Resour MitoGenome Announcement Ficus concinna is an important contributor to tropical forest biodiversity. Here, we provide the first report of the complete F. concinna chloroplast genome, thereby providing a basis for subsequent phylogenetic analyses of the Moraceae family. The final assembled chloroplast genome was 160,331 bp in size and included a 20,018 bp long small single-copy (SSC) region, an 88,541 bp long large single-copy (LSC) region, and two 25,886 bp inverted repeats (IRs). The total content of GC for this chloroplast genome was 42.6%, with respective frequencies of 33.6%, 35.9%, and 28.9% in the SSC, LSC, and IR regions, accordingly. Overall, the chloroplast genome was found to encode 131 genes, comprising 37 tRNAs, 86 protein-coding genes, and 8 rRNAs. Phylogenetic analyses revealed a close relationship between F. concinna and Ficus altissima, consistent with prior research results. Together, these data provide valuable insights regarding the evolution and conserved genetic features of F. concinna. Taylor & Francis 2022-02-20 /pmc/articles/PMC8865104/ /pubmed/35224193 http://dx.doi.org/10.1080/23802359.2022.2036649 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | MitoGenome Announcement Zhang, Pei-hua Hou, Zhu The complete chloroplast genome sequence of Ficus concinna (Moraceae) from Sichuan province |
title | The complete chloroplast genome sequence of Ficus concinna (Moraceae) from Sichuan province |
title_full | The complete chloroplast genome sequence of Ficus concinna (Moraceae) from Sichuan province |
title_fullStr | The complete chloroplast genome sequence of Ficus concinna (Moraceae) from Sichuan province |
title_full_unstemmed | The complete chloroplast genome sequence of Ficus concinna (Moraceae) from Sichuan province |
title_short | The complete chloroplast genome sequence of Ficus concinna (Moraceae) from Sichuan province |
title_sort | complete chloroplast genome sequence of ficus concinna (moraceae) from sichuan province |
topic | MitoGenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8865104/ https://www.ncbi.nlm.nih.gov/pubmed/35224193 http://dx.doi.org/10.1080/23802359.2022.2036649 |
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