Cargando…

Correlation analysis of m(6)A-modified regulators with immune microenvironment infiltrating cells in lung adenocarcinoma

OBJECT: Recent studies have demonstrated the epigenetic regulation of immune responses. However, the potential role of N6-methyladenosine methylation (m(6)A) in the tumor microenvironment (TME) remains unknown. METHOD: In this study, the m(6)A modification patterns of LUAD samples were comprehensive...

Descripción completa

Detalles Bibliográficos
Autores principales: Ye, Wei, Huang, Tianpeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8865675/
https://www.ncbi.nlm.nih.gov/pubmed/35196365
http://dx.doi.org/10.1371/journal.pone.0264384
_version_ 1784655677835182080
author Ye, Wei
Huang, Tianpeng
author_facet Ye, Wei
Huang, Tianpeng
author_sort Ye, Wei
collection PubMed
description OBJECT: Recent studies have demonstrated the epigenetic regulation of immune responses. However, the potential role of N6-methyladenosine methylation (m(6)A) in the tumor microenvironment (TME) remains unknown. METHOD: In this study, the m(6)A modification patterns of LUAD samples were comprehensively evaluated by combining TCGA and GEO data, while these modification patterns were systematically linked to the characteristics of immune infiltrating cells in TME. The m(6)A score was constructed using the principal component analysis algorithm to quantify the m(6)A modification mode of a single tumor. RESULT: There were three distinct patterns of m(6)A modification identified. The characteristics of TME cell infiltration in these three patterns were highly consistent with these three immune phenotypes of the tumors, including immune rejection, immune-inflammatory, and immune inert phenotypes. Low m(6)A scores were characterized by immune activation and poor survival rate. Besides, m(6)A scores were associated with tumor mutational load (TMB) and were able to increase the ability of TMB to predict immunotherapy. Two immunotherapy cohorts confirmed that the patients with lower m(6)A scores demonstrated significant therapeutic advantages and clinical benefits. m(6)A modifications play an important role in the development of TME diversity. Assessing the m(6)A modification pattern of individual tumors can deepen the understanding as to the characteristics of TME infiltration and guide more effective immunotherapy strategies.
format Online
Article
Text
id pubmed-8865675
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-88656752022-02-24 Correlation analysis of m(6)A-modified regulators with immune microenvironment infiltrating cells in lung adenocarcinoma Ye, Wei Huang, Tianpeng PLoS One Research Article OBJECT: Recent studies have demonstrated the epigenetic regulation of immune responses. However, the potential role of N6-methyladenosine methylation (m(6)A) in the tumor microenvironment (TME) remains unknown. METHOD: In this study, the m(6)A modification patterns of LUAD samples were comprehensively evaluated by combining TCGA and GEO data, while these modification patterns were systematically linked to the characteristics of immune infiltrating cells in TME. The m(6)A score was constructed using the principal component analysis algorithm to quantify the m(6)A modification mode of a single tumor. RESULT: There were three distinct patterns of m(6)A modification identified. The characteristics of TME cell infiltration in these three patterns were highly consistent with these three immune phenotypes of the tumors, including immune rejection, immune-inflammatory, and immune inert phenotypes. Low m(6)A scores were characterized by immune activation and poor survival rate. Besides, m(6)A scores were associated with tumor mutational load (TMB) and were able to increase the ability of TMB to predict immunotherapy. Two immunotherapy cohorts confirmed that the patients with lower m(6)A scores demonstrated significant therapeutic advantages and clinical benefits. m(6)A modifications play an important role in the development of TME diversity. Assessing the m(6)A modification pattern of individual tumors can deepen the understanding as to the characteristics of TME infiltration and guide more effective immunotherapy strategies. Public Library of Science 2022-02-23 /pmc/articles/PMC8865675/ /pubmed/35196365 http://dx.doi.org/10.1371/journal.pone.0264384 Text en © 2022 Ye, Huang https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ye, Wei
Huang, Tianpeng
Correlation analysis of m(6)A-modified regulators with immune microenvironment infiltrating cells in lung adenocarcinoma
title Correlation analysis of m(6)A-modified regulators with immune microenvironment infiltrating cells in lung adenocarcinoma
title_full Correlation analysis of m(6)A-modified regulators with immune microenvironment infiltrating cells in lung adenocarcinoma
title_fullStr Correlation analysis of m(6)A-modified regulators with immune microenvironment infiltrating cells in lung adenocarcinoma
title_full_unstemmed Correlation analysis of m(6)A-modified regulators with immune microenvironment infiltrating cells in lung adenocarcinoma
title_short Correlation analysis of m(6)A-modified regulators with immune microenvironment infiltrating cells in lung adenocarcinoma
title_sort correlation analysis of m(6)a-modified regulators with immune microenvironment infiltrating cells in lung adenocarcinoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8865675/
https://www.ncbi.nlm.nih.gov/pubmed/35196365
http://dx.doi.org/10.1371/journal.pone.0264384
work_keys_str_mv AT yewei correlationanalysisofm6amodifiedregulatorswithimmunemicroenvironmentinfiltratingcellsinlungadenocarcinoma
AT huangtianpeng correlationanalysisofm6amodifiedregulatorswithimmunemicroenvironmentinfiltratingcellsinlungadenocarcinoma