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Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model
Precise segmentation of wheat spikes from a complex background is necessary for obtaining image-based phenotypic information of wheat traits such as yield estimation and spike morphology. A new instance segmentation method based on a Hybrid Task Cascade model was proposed to solve the wheat spike de...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8866238/ https://www.ncbi.nlm.nih.gov/pubmed/35222491 http://dx.doi.org/10.3389/fpls.2022.834938 |
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author | Zhang, Jiajing Min, An Steffenson, Brian J. Su, Wen-Hao Hirsch, Cory D. Anderson, James Wei, Jian Ma, Qin Yang, Ce |
author_facet | Zhang, Jiajing Min, An Steffenson, Brian J. Su, Wen-Hao Hirsch, Cory D. Anderson, James Wei, Jian Ma, Qin Yang, Ce |
author_sort | Zhang, Jiajing |
collection | PubMed |
description | Precise segmentation of wheat spikes from a complex background is necessary for obtaining image-based phenotypic information of wheat traits such as yield estimation and spike morphology. A new instance segmentation method based on a Hybrid Task Cascade model was proposed to solve the wheat spike detection problem with improved detection results. In this study, wheat images were collected from fields where the environment varied both spatially and temporally. Res2Net50 was adopted as a backbone network, combined with multi-scale training, deformable convolutional networks, and Generic ROI Extractor for rich feature learning. The proposed methods were trained and validated, and the average precision (AP) obtained for the bounding box and mask was 0.904 and 0.907, respectively, and the accuracy for wheat spike counting was 99.29%. Comprehensive empirical analyses revealed that our method (Wheat-Net) performed well on challenging field-based datasets with mixed qualities, particularly those with various backgrounds and wheat spike adjacence/occlusion. These results provide evidence for dense wheat spike detection capabilities with masking, which is useful for not only wheat yield estimation but also spike morphology assessments. |
format | Online Article Text |
id | pubmed-8866238 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88662382022-02-25 Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model Zhang, Jiajing Min, An Steffenson, Brian J. Su, Wen-Hao Hirsch, Cory D. Anderson, James Wei, Jian Ma, Qin Yang, Ce Front Plant Sci Plant Science Precise segmentation of wheat spikes from a complex background is necessary for obtaining image-based phenotypic information of wheat traits such as yield estimation and spike morphology. A new instance segmentation method based on a Hybrid Task Cascade model was proposed to solve the wheat spike detection problem with improved detection results. In this study, wheat images were collected from fields where the environment varied both spatially and temporally. Res2Net50 was adopted as a backbone network, combined with multi-scale training, deformable convolutional networks, and Generic ROI Extractor for rich feature learning. The proposed methods were trained and validated, and the average precision (AP) obtained for the bounding box and mask was 0.904 and 0.907, respectively, and the accuracy for wheat spike counting was 99.29%. Comprehensive empirical analyses revealed that our method (Wheat-Net) performed well on challenging field-based datasets with mixed qualities, particularly those with various backgrounds and wheat spike adjacence/occlusion. These results provide evidence for dense wheat spike detection capabilities with masking, which is useful for not only wheat yield estimation but also spike morphology assessments. Frontiers Media S.A. 2022-02-10 /pmc/articles/PMC8866238/ /pubmed/35222491 http://dx.doi.org/10.3389/fpls.2022.834938 Text en Copyright © 2022 Zhang, Min, Steffenson, Su, Hirsch, Anderson, Wei, Ma and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Zhang, Jiajing Min, An Steffenson, Brian J. Su, Wen-Hao Hirsch, Cory D. Anderson, James Wei, Jian Ma, Qin Yang, Ce Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model |
title | Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model |
title_full | Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model |
title_fullStr | Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model |
title_full_unstemmed | Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model |
title_short | Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model |
title_sort | wheat-net: an automatic dense wheat spike segmentation method based on an optimized hybrid task cascade model |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8866238/ https://www.ncbi.nlm.nih.gov/pubmed/35222491 http://dx.doi.org/10.3389/fpls.2022.834938 |
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