Cargando…

Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model

Precise segmentation of wheat spikes from a complex background is necessary for obtaining image-based phenotypic information of wheat traits such as yield estimation and spike morphology. A new instance segmentation method based on a Hybrid Task Cascade model was proposed to solve the wheat spike de...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Jiajing, Min, An, Steffenson, Brian J., Su, Wen-Hao, Hirsch, Cory D., Anderson, James, Wei, Jian, Ma, Qin, Yang, Ce
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8866238/
https://www.ncbi.nlm.nih.gov/pubmed/35222491
http://dx.doi.org/10.3389/fpls.2022.834938
_version_ 1784655790165983232
author Zhang, Jiajing
Min, An
Steffenson, Brian J.
Su, Wen-Hao
Hirsch, Cory D.
Anderson, James
Wei, Jian
Ma, Qin
Yang, Ce
author_facet Zhang, Jiajing
Min, An
Steffenson, Brian J.
Su, Wen-Hao
Hirsch, Cory D.
Anderson, James
Wei, Jian
Ma, Qin
Yang, Ce
author_sort Zhang, Jiajing
collection PubMed
description Precise segmentation of wheat spikes from a complex background is necessary for obtaining image-based phenotypic information of wheat traits such as yield estimation and spike morphology. A new instance segmentation method based on a Hybrid Task Cascade model was proposed to solve the wheat spike detection problem with improved detection results. In this study, wheat images were collected from fields where the environment varied both spatially and temporally. Res2Net50 was adopted as a backbone network, combined with multi-scale training, deformable convolutional networks, and Generic ROI Extractor for rich feature learning. The proposed methods were trained and validated, and the average precision (AP) obtained for the bounding box and mask was 0.904 and 0.907, respectively, and the accuracy for wheat spike counting was 99.29%. Comprehensive empirical analyses revealed that our method (Wheat-Net) performed well on challenging field-based datasets with mixed qualities, particularly those with various backgrounds and wheat spike adjacence/occlusion. These results provide evidence for dense wheat spike detection capabilities with masking, which is useful for not only wheat yield estimation but also spike morphology assessments.
format Online
Article
Text
id pubmed-8866238
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-88662382022-02-25 Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model Zhang, Jiajing Min, An Steffenson, Brian J. Su, Wen-Hao Hirsch, Cory D. Anderson, James Wei, Jian Ma, Qin Yang, Ce Front Plant Sci Plant Science Precise segmentation of wheat spikes from a complex background is necessary for obtaining image-based phenotypic information of wheat traits such as yield estimation and spike morphology. A new instance segmentation method based on a Hybrid Task Cascade model was proposed to solve the wheat spike detection problem with improved detection results. In this study, wheat images were collected from fields where the environment varied both spatially and temporally. Res2Net50 was adopted as a backbone network, combined with multi-scale training, deformable convolutional networks, and Generic ROI Extractor for rich feature learning. The proposed methods were trained and validated, and the average precision (AP) obtained for the bounding box and mask was 0.904 and 0.907, respectively, and the accuracy for wheat spike counting was 99.29%. Comprehensive empirical analyses revealed that our method (Wheat-Net) performed well on challenging field-based datasets with mixed qualities, particularly those with various backgrounds and wheat spike adjacence/occlusion. These results provide evidence for dense wheat spike detection capabilities with masking, which is useful for not only wheat yield estimation but also spike morphology assessments. Frontiers Media S.A. 2022-02-10 /pmc/articles/PMC8866238/ /pubmed/35222491 http://dx.doi.org/10.3389/fpls.2022.834938 Text en Copyright © 2022 Zhang, Min, Steffenson, Su, Hirsch, Anderson, Wei, Ma and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Zhang, Jiajing
Min, An
Steffenson, Brian J.
Su, Wen-Hao
Hirsch, Cory D.
Anderson, James
Wei, Jian
Ma, Qin
Yang, Ce
Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model
title Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model
title_full Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model
title_fullStr Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model
title_full_unstemmed Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model
title_short Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model
title_sort wheat-net: an automatic dense wheat spike segmentation method based on an optimized hybrid task cascade model
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8866238/
https://www.ncbi.nlm.nih.gov/pubmed/35222491
http://dx.doi.org/10.3389/fpls.2022.834938
work_keys_str_mv AT zhangjiajing wheatnetanautomaticdensewheatspikesegmentationmethodbasedonanoptimizedhybridtaskcascademodel
AT minan wheatnetanautomaticdensewheatspikesegmentationmethodbasedonanoptimizedhybridtaskcascademodel
AT steffensonbrianj wheatnetanautomaticdensewheatspikesegmentationmethodbasedonanoptimizedhybridtaskcascademodel
AT suwenhao wheatnetanautomaticdensewheatspikesegmentationmethodbasedonanoptimizedhybridtaskcascademodel
AT hirschcoryd wheatnetanautomaticdensewheatspikesegmentationmethodbasedonanoptimizedhybridtaskcascademodel
AT andersonjames wheatnetanautomaticdensewheatspikesegmentationmethodbasedonanoptimizedhybridtaskcascademodel
AT weijian wheatnetanautomaticdensewheatspikesegmentationmethodbasedonanoptimizedhybridtaskcascademodel
AT maqin wheatnetanautomaticdensewheatspikesegmentationmethodbasedonanoptimizedhybridtaskcascademodel
AT yangce wheatnetanautomaticdensewheatspikesegmentationmethodbasedonanoptimizedhybridtaskcascademodel