Cargando…

Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org

Gaussian blurring is a well-established method for image data augmentation: it may generate a large set of images from a small set of pictures for training and testing purposes for Artificial Intelligence (AI) applications. When we apply AI for non-imagelike biological data, hardly any related metho...

Descripción completa

Detalles Bibliográficos
Autores principales: Keresztes, László, Szögi, Evelin, Varga, Bálint, Grolmusz, Vince
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8866411/
https://www.ncbi.nlm.nih.gov/pubmed/35197486
http://dx.doi.org/10.1038/s41598-022-06697-4
_version_ 1784655830684008448
author Keresztes, László
Szögi, Evelin
Varga, Bálint
Grolmusz, Vince
author_facet Keresztes, László
Szögi, Evelin
Varga, Bálint
Grolmusz, Vince
author_sort Keresztes, László
collection PubMed
description Gaussian blurring is a well-established method for image data augmentation: it may generate a large set of images from a small set of pictures for training and testing purposes for Artificial Intelligence (AI) applications. When we apply AI for non-imagelike biological data, hardly any related method exists. Here we introduce the “Newtonian blurring” in human braingraph (or connectome) augmentation: Started from a dataset of 1053 subjects from the public release of the Human Connectome Project, we first repeat a probabilistic weighted braingraph construction algorithm 10 times for describing the connections of distinct cerebral areas, then for every possible set of 7 of these graphs, delete the lower and upper extremes, and average the remaining 7 − 2 = 5 edge-weights for the data of each subject. This way we augment the 1053 graph-set to 120 [Formula: see text] 1053 = 126,360 graphs. In augmentation techniques, it is an important requirement that no artificial additions should be introduced into the dataset. Gaussian blurring and also this Newtonian blurring satisfy this goal. The resulting dataset of 126,360 graphs, each in 5 resolutions (i.e., 631,800 graphs in total), is freely available at the site https://braingraph.org/cms/download-pit-group-connectomes/. Augmenting with Newtonian blurring may also be applicable in other non-image-related fields, where probabilistic processing and data averaging are implemented.
format Online
Article
Text
id pubmed-8866411
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-88664112022-02-25 Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org Keresztes, László Szögi, Evelin Varga, Bálint Grolmusz, Vince Sci Rep Article Gaussian blurring is a well-established method for image data augmentation: it may generate a large set of images from a small set of pictures for training and testing purposes for Artificial Intelligence (AI) applications. When we apply AI for non-imagelike biological data, hardly any related method exists. Here we introduce the “Newtonian blurring” in human braingraph (or connectome) augmentation: Started from a dataset of 1053 subjects from the public release of the Human Connectome Project, we first repeat a probabilistic weighted braingraph construction algorithm 10 times for describing the connections of distinct cerebral areas, then for every possible set of 7 of these graphs, delete the lower and upper extremes, and average the remaining 7 − 2 = 5 edge-weights for the data of each subject. This way we augment the 1053 graph-set to 120 [Formula: see text] 1053 = 126,360 graphs. In augmentation techniques, it is an important requirement that no artificial additions should be introduced into the dataset. Gaussian blurring and also this Newtonian blurring satisfy this goal. The resulting dataset of 126,360 graphs, each in 5 resolutions (i.e., 631,800 graphs in total), is freely available at the site https://braingraph.org/cms/download-pit-group-connectomes/. Augmenting with Newtonian blurring may also be applicable in other non-image-related fields, where probabilistic processing and data averaging are implemented. Nature Publishing Group UK 2022-02-23 /pmc/articles/PMC8866411/ /pubmed/35197486 http://dx.doi.org/10.1038/s41598-022-06697-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Keresztes, László
Szögi, Evelin
Varga, Bálint
Grolmusz, Vince
Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org
title Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org
title_full Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org
title_fullStr Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org
title_full_unstemmed Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org
title_short Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org
title_sort introducing and applying newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8866411/
https://www.ncbi.nlm.nih.gov/pubmed/35197486
http://dx.doi.org/10.1038/s41598-022-06697-4
work_keys_str_mv AT kereszteslaszlo introducingandapplyingnewtonianblurringanaugmenteddatasetof126000humanconnectomesatbraingraphorg
AT szogievelin introducingandapplyingnewtonianblurringanaugmenteddatasetof126000humanconnectomesatbraingraphorg
AT vargabalint introducingandapplyingnewtonianblurringanaugmenteddatasetof126000humanconnectomesatbraingraphorg
AT grolmuszvince introducingandapplyingnewtonianblurringanaugmenteddatasetof126000humanconnectomesatbraingraphorg