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Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org
Gaussian blurring is a well-established method for image data augmentation: it may generate a large set of images from a small set of pictures for training and testing purposes for Artificial Intelligence (AI) applications. When we apply AI for non-imagelike biological data, hardly any related metho...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8866411/ https://www.ncbi.nlm.nih.gov/pubmed/35197486 http://dx.doi.org/10.1038/s41598-022-06697-4 |
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author | Keresztes, László Szögi, Evelin Varga, Bálint Grolmusz, Vince |
author_facet | Keresztes, László Szögi, Evelin Varga, Bálint Grolmusz, Vince |
author_sort | Keresztes, László |
collection | PubMed |
description | Gaussian blurring is a well-established method for image data augmentation: it may generate a large set of images from a small set of pictures for training and testing purposes for Artificial Intelligence (AI) applications. When we apply AI for non-imagelike biological data, hardly any related method exists. Here we introduce the “Newtonian blurring” in human braingraph (or connectome) augmentation: Started from a dataset of 1053 subjects from the public release of the Human Connectome Project, we first repeat a probabilistic weighted braingraph construction algorithm 10 times for describing the connections of distinct cerebral areas, then for every possible set of 7 of these graphs, delete the lower and upper extremes, and average the remaining 7 − 2 = 5 edge-weights for the data of each subject. This way we augment the 1053 graph-set to 120 [Formula: see text] 1053 = 126,360 graphs. In augmentation techniques, it is an important requirement that no artificial additions should be introduced into the dataset. Gaussian blurring and also this Newtonian blurring satisfy this goal. The resulting dataset of 126,360 graphs, each in 5 resolutions (i.e., 631,800 graphs in total), is freely available at the site https://braingraph.org/cms/download-pit-group-connectomes/. Augmenting with Newtonian blurring may also be applicable in other non-image-related fields, where probabilistic processing and data averaging are implemented. |
format | Online Article Text |
id | pubmed-8866411 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-88664112022-02-25 Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org Keresztes, László Szögi, Evelin Varga, Bálint Grolmusz, Vince Sci Rep Article Gaussian blurring is a well-established method for image data augmentation: it may generate a large set of images from a small set of pictures for training and testing purposes for Artificial Intelligence (AI) applications. When we apply AI for non-imagelike biological data, hardly any related method exists. Here we introduce the “Newtonian blurring” in human braingraph (or connectome) augmentation: Started from a dataset of 1053 subjects from the public release of the Human Connectome Project, we first repeat a probabilistic weighted braingraph construction algorithm 10 times for describing the connections of distinct cerebral areas, then for every possible set of 7 of these graphs, delete the lower and upper extremes, and average the remaining 7 − 2 = 5 edge-weights for the data of each subject. This way we augment the 1053 graph-set to 120 [Formula: see text] 1053 = 126,360 graphs. In augmentation techniques, it is an important requirement that no artificial additions should be introduced into the dataset. Gaussian blurring and also this Newtonian blurring satisfy this goal. The resulting dataset of 126,360 graphs, each in 5 resolutions (i.e., 631,800 graphs in total), is freely available at the site https://braingraph.org/cms/download-pit-group-connectomes/. Augmenting with Newtonian blurring may also be applicable in other non-image-related fields, where probabilistic processing and data averaging are implemented. Nature Publishing Group UK 2022-02-23 /pmc/articles/PMC8866411/ /pubmed/35197486 http://dx.doi.org/10.1038/s41598-022-06697-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Keresztes, László Szögi, Evelin Varga, Bálint Grolmusz, Vince Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org |
title | Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org |
title_full | Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org |
title_fullStr | Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org |
title_full_unstemmed | Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org |
title_short | Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org |
title_sort | introducing and applying newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8866411/ https://www.ncbi.nlm.nih.gov/pubmed/35197486 http://dx.doi.org/10.1038/s41598-022-06697-4 |
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