Cargando…

Exploiting probability density function of deep convolutional autoencoders’ latent space for reliable COVID-19 detection on CT scans

We present a probabilistic method for classifying chest computed tomography (CT) scans into COVID-19 and non-COVID-19. To this end, we design and train, in an unsupervised manner, a deep convolutional autoencoder (DCAE) on a selected training data set, which is composed only of COVID-19 CT scans. On...

Descripción completa

Detalles Bibliográficos
Autores principales: Sarv Ahrabi, Sima, Piazzo, Lorenzo, Momenzadeh, Alireza, Scarpiniti, Michele, Baccarelli, Enzo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8867464/
https://www.ncbi.nlm.nih.gov/pubmed/35228777
http://dx.doi.org/10.1007/s11227-022-04349-y
_version_ 1784656059361656832
author Sarv Ahrabi, Sima
Piazzo, Lorenzo
Momenzadeh, Alireza
Scarpiniti, Michele
Baccarelli, Enzo
author_facet Sarv Ahrabi, Sima
Piazzo, Lorenzo
Momenzadeh, Alireza
Scarpiniti, Michele
Baccarelli, Enzo
author_sort Sarv Ahrabi, Sima
collection PubMed
description We present a probabilistic method for classifying chest computed tomography (CT) scans into COVID-19 and non-COVID-19. To this end, we design and train, in an unsupervised manner, a deep convolutional autoencoder (DCAE) on a selected training data set, which is composed only of COVID-19 CT scans. Once the model is trained, the encoder can generate the compact hidden representation (the hidden feature vectors) of the training data set. Afterwards, we exploit the obtained hidden representation to build up the target probability density function (PDF) of the training data set by means of kernel density estimation (KDE). Subsequently, in the test phase, we feed a test CT into the trained encoder to produce the corresponding hidden feature vector, and then, we utilise the target PDF to compute the corresponding PDF value of the test image. Finally, this obtained value is compared to a threshold to assign the COVID-19 label or non-COVID-19 to the test image. We numerically check our approach’s performance (i.e. test accuracy and training times) by comparing it with those of some state-of-the-art methods.
format Online
Article
Text
id pubmed-8867464
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Springer US
record_format MEDLINE/PubMed
spelling pubmed-88674642022-02-24 Exploiting probability density function of deep convolutional autoencoders’ latent space for reliable COVID-19 detection on CT scans Sarv Ahrabi, Sima Piazzo, Lorenzo Momenzadeh, Alireza Scarpiniti, Michele Baccarelli, Enzo J Supercomput Article We present a probabilistic method for classifying chest computed tomography (CT) scans into COVID-19 and non-COVID-19. To this end, we design and train, in an unsupervised manner, a deep convolutional autoencoder (DCAE) on a selected training data set, which is composed only of COVID-19 CT scans. Once the model is trained, the encoder can generate the compact hidden representation (the hidden feature vectors) of the training data set. Afterwards, we exploit the obtained hidden representation to build up the target probability density function (PDF) of the training data set by means of kernel density estimation (KDE). Subsequently, in the test phase, we feed a test CT into the trained encoder to produce the corresponding hidden feature vector, and then, we utilise the target PDF to compute the corresponding PDF value of the test image. Finally, this obtained value is compared to a threshold to assign the COVID-19 label or non-COVID-19 to the test image. We numerically check our approach’s performance (i.e. test accuracy and training times) by comparing it with those of some state-of-the-art methods. Springer US 2022-02-24 2022 /pmc/articles/PMC8867464/ /pubmed/35228777 http://dx.doi.org/10.1007/s11227-022-04349-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sarv Ahrabi, Sima
Piazzo, Lorenzo
Momenzadeh, Alireza
Scarpiniti, Michele
Baccarelli, Enzo
Exploiting probability density function of deep convolutional autoencoders’ latent space for reliable COVID-19 detection on CT scans
title Exploiting probability density function of deep convolutional autoencoders’ latent space for reliable COVID-19 detection on CT scans
title_full Exploiting probability density function of deep convolutional autoencoders’ latent space for reliable COVID-19 detection on CT scans
title_fullStr Exploiting probability density function of deep convolutional autoencoders’ latent space for reliable COVID-19 detection on CT scans
title_full_unstemmed Exploiting probability density function of deep convolutional autoencoders’ latent space for reliable COVID-19 detection on CT scans
title_short Exploiting probability density function of deep convolutional autoencoders’ latent space for reliable COVID-19 detection on CT scans
title_sort exploiting probability density function of deep convolutional autoencoders’ latent space for reliable covid-19 detection on ct scans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8867464/
https://www.ncbi.nlm.nih.gov/pubmed/35228777
http://dx.doi.org/10.1007/s11227-022-04349-y
work_keys_str_mv AT sarvahrabisima exploitingprobabilitydensityfunctionofdeepconvolutionalautoencoderslatentspaceforreliablecovid19detectiononctscans
AT piazzolorenzo exploitingprobabilitydensityfunctionofdeepconvolutionalautoencoderslatentspaceforreliablecovid19detectiononctscans
AT momenzadehalireza exploitingprobabilitydensityfunctionofdeepconvolutionalautoencoderslatentspaceforreliablecovid19detectiononctscans
AT scarpinitimichele exploitingprobabilitydensityfunctionofdeepconvolutionalautoencoderslatentspaceforreliablecovid19detectiononctscans
AT baccarellienzo exploitingprobabilitydensityfunctionofdeepconvolutionalautoencoderslatentspaceforreliablecovid19detectiononctscans