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Detecting Phytoplankton Cell Viability Using NIR Raman Spectroscopy and PCA
[Image: see text] Raman spectroscopy has long been suggested as a potentially fast and sensitive method to monitor phytoplankton abundance and composition in marine environments. However, the pitfalls of visible detection methods in pigment-rich biological material and the complexity of their spectr...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8867472/ https://www.ncbi.nlm.nih.gov/pubmed/35224357 http://dx.doi.org/10.1021/acsomega.1c06262 |
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author | Novikova, Nina I. Matthews, Hannah Williams, Isabelle Sewell, Mary A. Nieuwoudt, Michel K. Simpson, M. Cather Broderick, Neil G. R. |
author_facet | Novikova, Nina I. Matthews, Hannah Williams, Isabelle Sewell, Mary A. Nieuwoudt, Michel K. Simpson, M. Cather Broderick, Neil G. R. |
author_sort | Novikova, Nina I. |
collection | PubMed |
description | [Image: see text] Raman spectroscopy has long been suggested as a potentially fast and sensitive method to monitor phytoplankton abundance and composition in marine environments. However, the pitfalls of visible detection methods in pigment-rich biological material and the complexity of their spectra have hindered their application as reliable in situ detection methods. In this study we combine 1064 nm confocal Raman spectroscopy with multivariate statistical analysis techniques (principle component analysis and partial leas-squares discriminant analysis) to reliably measure differences in the cell viability of a diatom species (Chaetoceros muelleri) and two haptophyte species (Diacronema lutheri and Tisochrysis lutea) of phytoplankton. The low fluorescence background due to this combined approach of NIR Raman spectroscopy and multivariate data analysis allowed small changes in the overall spectral profiles to be reliably monitored, enabling the identification of the specific spectral features that could classify cells as viable or nonviable regardless of their species. The most significant differences upon cell death were shown by characteristic shifts in the carotenoid bands at 1527 and 1158 cm(–1). The contributions from other biomolecules were less pronounced but revealed changes that could be identified using this combination of techniques. |
format | Online Article Text |
id | pubmed-8867472 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-88674722022-02-25 Detecting Phytoplankton Cell Viability Using NIR Raman Spectroscopy and PCA Novikova, Nina I. Matthews, Hannah Williams, Isabelle Sewell, Mary A. Nieuwoudt, Michel K. Simpson, M. Cather Broderick, Neil G. R. ACS Omega [Image: see text] Raman spectroscopy has long been suggested as a potentially fast and sensitive method to monitor phytoplankton abundance and composition in marine environments. However, the pitfalls of visible detection methods in pigment-rich biological material and the complexity of their spectra have hindered their application as reliable in situ detection methods. In this study we combine 1064 nm confocal Raman spectroscopy with multivariate statistical analysis techniques (principle component analysis and partial leas-squares discriminant analysis) to reliably measure differences in the cell viability of a diatom species (Chaetoceros muelleri) and two haptophyte species (Diacronema lutheri and Tisochrysis lutea) of phytoplankton. The low fluorescence background due to this combined approach of NIR Raman spectroscopy and multivariate data analysis allowed small changes in the overall spectral profiles to be reliably monitored, enabling the identification of the specific spectral features that could classify cells as viable or nonviable regardless of their species. The most significant differences upon cell death were shown by characteristic shifts in the carotenoid bands at 1527 and 1158 cm(–1). The contributions from other biomolecules were less pronounced but revealed changes that could be identified using this combination of techniques. American Chemical Society 2022-02-10 /pmc/articles/PMC8867472/ /pubmed/35224357 http://dx.doi.org/10.1021/acsomega.1c06262 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Novikova, Nina I. Matthews, Hannah Williams, Isabelle Sewell, Mary A. Nieuwoudt, Michel K. Simpson, M. Cather Broderick, Neil G. R. Detecting Phytoplankton Cell Viability Using NIR Raman Spectroscopy and PCA |
title | Detecting Phytoplankton Cell Viability Using NIR Raman
Spectroscopy and PCA |
title_full | Detecting Phytoplankton Cell Viability Using NIR Raman
Spectroscopy and PCA |
title_fullStr | Detecting Phytoplankton Cell Viability Using NIR Raman
Spectroscopy and PCA |
title_full_unstemmed | Detecting Phytoplankton Cell Viability Using NIR Raman
Spectroscopy and PCA |
title_short | Detecting Phytoplankton Cell Viability Using NIR Raman
Spectroscopy and PCA |
title_sort | detecting phytoplankton cell viability using nir raman
spectroscopy and pca |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8867472/ https://www.ncbi.nlm.nih.gov/pubmed/35224357 http://dx.doi.org/10.1021/acsomega.1c06262 |
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