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Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma
BACKGROUND: Transfer learning is a common practice in image classification with deep learning where the available data is often limited for training a complex model with millions of parameters. However, transferring language models requires special attention since cross-domain vocabularies (e.g. bet...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8867666/ https://www.ncbi.nlm.nih.gov/pubmed/35197110 http://dx.doi.org/10.1186/s13326-022-00262-8 |
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author | Tariq, Amara Kallas, Omar Balthazar, Patricia Lee, Scott Jeffery Desser, Terry Rubin, Daniel Gichoya, Judy Wawira Banerjee, Imon |
author_facet | Tariq, Amara Kallas, Omar Balthazar, Patricia Lee, Scott Jeffery Desser, Terry Rubin, Daniel Gichoya, Judy Wawira Banerjee, Imon |
author_sort | Tariq, Amara |
collection | PubMed |
description | BACKGROUND: Transfer learning is a common practice in image classification with deep learning where the available data is often limited for training a complex model with millions of parameters. However, transferring language models requires special attention since cross-domain vocabularies (e.g. between two different modalities MR and US) do not always overlap as the pixel intensity range overlaps mostly for images. METHOD: We present a concept of similar domain adaptation where we transfer inter-institutional language models (context-dependent and context-independent) between two different modalities (ultrasound and MRI) to capture liver abnormalities. RESULTS: We use MR and US screening exam reports for hepatocellular carcinoma as the use-case and apply the transfer language space strategy to automatically label imaging exams with and without structured template with > 0.9 average f1-score. CONCLUSION: We conclude that transfer learning along with fine-tuning the discriminative model is often more effective for performing shared targeted tasks than the training for a language space from scratch. |
format | Online Article Text |
id | pubmed-8867666 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-88676662022-02-28 Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma Tariq, Amara Kallas, Omar Balthazar, Patricia Lee, Scott Jeffery Desser, Terry Rubin, Daniel Gichoya, Judy Wawira Banerjee, Imon J Biomed Semantics Research BACKGROUND: Transfer learning is a common practice in image classification with deep learning where the available data is often limited for training a complex model with millions of parameters. However, transferring language models requires special attention since cross-domain vocabularies (e.g. between two different modalities MR and US) do not always overlap as the pixel intensity range overlaps mostly for images. METHOD: We present a concept of similar domain adaptation where we transfer inter-institutional language models (context-dependent and context-independent) between two different modalities (ultrasound and MRI) to capture liver abnormalities. RESULTS: We use MR and US screening exam reports for hepatocellular carcinoma as the use-case and apply the transfer language space strategy to automatically label imaging exams with and without structured template with > 0.9 average f1-score. CONCLUSION: We conclude that transfer learning along with fine-tuning the discriminative model is often more effective for performing shared targeted tasks than the training for a language space from scratch. BioMed Central 2022-02-23 /pmc/articles/PMC8867666/ /pubmed/35197110 http://dx.doi.org/10.1186/s13326-022-00262-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Tariq, Amara Kallas, Omar Balthazar, Patricia Lee, Scott Jeffery Desser, Terry Rubin, Daniel Gichoya, Judy Wawira Banerjee, Imon Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma |
title | Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma |
title_full | Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma |
title_fullStr | Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma |
title_full_unstemmed | Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma |
title_short | Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma |
title_sort | transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8867666/ https://www.ncbi.nlm.nih.gov/pubmed/35197110 http://dx.doi.org/10.1186/s13326-022-00262-8 |
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