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Assessment of intertidal seaweed biomass based on RGB imagery

The Above Ground Biomass (AGB) of seaweeds is the most fundamental ecological parameter as the material and energy basis of intertidal ecosystems. Therefore, there is a need to develop an efficient survey method that has less impact on the environment. With the advent of technology and the availabil...

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Autores principales: Chen, Jianqu, Li, Xunmeng, Wang, Kai, Zhang, Shouyu, Li, Jun, Sun, Mingbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8870495/
https://www.ncbi.nlm.nih.gov/pubmed/35202425
http://dx.doi.org/10.1371/journal.pone.0263416
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author Chen, Jianqu
Li, Xunmeng
Wang, Kai
Zhang, Shouyu
Li, Jun
Sun, Mingbo
author_facet Chen, Jianqu
Li, Xunmeng
Wang, Kai
Zhang, Shouyu
Li, Jun
Sun, Mingbo
author_sort Chen, Jianqu
collection PubMed
description The Above Ground Biomass (AGB) of seaweeds is the most fundamental ecological parameter as the material and energy basis of intertidal ecosystems. Therefore, there is a need to develop an efficient survey method that has less impact on the environment. With the advent of technology and the availability of popular filming devices such as smartphones and cameras, intertidal seaweed wet biomass can be surveyed by remote sensing using popular RGB imaging sensors. In this paper, 143 in situ sites of seaweed in the intertidal zone of GouQi Island, ShengSi County, Zhejiang Province, were sampled and biomass inversions were performed. The hyperspectral data of seaweed at different growth stages were analyzed, and it was found that the variation range was small (visible light range < 0.1). Through Principal Component Analysis (PCA), Most of the variance is explained in the first principal component, and the load allocated to the three kinds of seaweed is more than 90%. Through Pearson correlation analysis, 24 parameters of spectral features, 9 parameters of texture features (27 in total for the three RGB bands) and parameters of combined spectral and texture features of the images were selected for screening, and regression prediction was performed using two methods: Random Forest (RF), and Gradient Boosted Decision Tree (GBDT), combined with Pearson correlation coefficients. Compared with the other two models, GBDT has better fitting accuracy in the inversion of seaweed biomass, and the highest R(2) was obtained when the top 17, 17 and 11 parameters with strong correlation were selected for the regression prediction by Pearson’s correlation coefficient for Ulva australis, Sargassum thunbergii, and Sargassum fusiforme, and the R(2) for Ulva australis was 0.784, RMSE 156.129, MAE 50.691 and MAPE 28.201, the R(2) for Sargassum thunbergii was 0.854, RMSE 790.487, MAE 327.108 and MAPE 19.039, and the R(2) for Sargassum fusiforme was 0.808, RMSE 445.067 and MAPE 28.822. MAE was 180.172 and MAPE was 28.822. The study combines in situ survey with machine learning methods, which has the advantages of being popular, efficient and environmentally friendly, and can provide technical support for intertidal seaweed surveys.
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spelling pubmed-88704952022-02-25 Assessment of intertidal seaweed biomass based on RGB imagery Chen, Jianqu Li, Xunmeng Wang, Kai Zhang, Shouyu Li, Jun Sun, Mingbo PLoS One Research Article The Above Ground Biomass (AGB) of seaweeds is the most fundamental ecological parameter as the material and energy basis of intertidal ecosystems. Therefore, there is a need to develop an efficient survey method that has less impact on the environment. With the advent of technology and the availability of popular filming devices such as smartphones and cameras, intertidal seaweed wet biomass can be surveyed by remote sensing using popular RGB imaging sensors. In this paper, 143 in situ sites of seaweed in the intertidal zone of GouQi Island, ShengSi County, Zhejiang Province, were sampled and biomass inversions were performed. The hyperspectral data of seaweed at different growth stages were analyzed, and it was found that the variation range was small (visible light range < 0.1). Through Principal Component Analysis (PCA), Most of the variance is explained in the first principal component, and the load allocated to the three kinds of seaweed is more than 90%. Through Pearson correlation analysis, 24 parameters of spectral features, 9 parameters of texture features (27 in total for the three RGB bands) and parameters of combined spectral and texture features of the images were selected for screening, and regression prediction was performed using two methods: Random Forest (RF), and Gradient Boosted Decision Tree (GBDT), combined with Pearson correlation coefficients. Compared with the other two models, GBDT has better fitting accuracy in the inversion of seaweed biomass, and the highest R(2) was obtained when the top 17, 17 and 11 parameters with strong correlation were selected for the regression prediction by Pearson’s correlation coefficient for Ulva australis, Sargassum thunbergii, and Sargassum fusiforme, and the R(2) for Ulva australis was 0.784, RMSE 156.129, MAE 50.691 and MAPE 28.201, the R(2) for Sargassum thunbergii was 0.854, RMSE 790.487, MAE 327.108 and MAPE 19.039, and the R(2) for Sargassum fusiforme was 0.808, RMSE 445.067 and MAPE 28.822. MAE was 180.172 and MAPE was 28.822. The study combines in situ survey with machine learning methods, which has the advantages of being popular, efficient and environmentally friendly, and can provide technical support for intertidal seaweed surveys. Public Library of Science 2022-02-24 /pmc/articles/PMC8870495/ /pubmed/35202425 http://dx.doi.org/10.1371/journal.pone.0263416 Text en © 2022 Chen et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Chen, Jianqu
Li, Xunmeng
Wang, Kai
Zhang, Shouyu
Li, Jun
Sun, Mingbo
Assessment of intertidal seaweed biomass based on RGB imagery
title Assessment of intertidal seaweed biomass based on RGB imagery
title_full Assessment of intertidal seaweed biomass based on RGB imagery
title_fullStr Assessment of intertidal seaweed biomass based on RGB imagery
title_full_unstemmed Assessment of intertidal seaweed biomass based on RGB imagery
title_short Assessment of intertidal seaweed biomass based on RGB imagery
title_sort assessment of intertidal seaweed biomass based on rgb imagery
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8870495/
https://www.ncbi.nlm.nih.gov/pubmed/35202425
http://dx.doi.org/10.1371/journal.pone.0263416
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