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CoarSAS2hvec: Heterogeneous Information Network Embedding with Balanced Network Sampling
Heterogeneous information network (HIN) embedding is an important tool for tasks such as node classification, community detection, and recommendation. It aims to find the representations of nodes that preserve the proximity between entities of different nature. A family of approaches that are widely...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8870891/ https://www.ncbi.nlm.nih.gov/pubmed/35205570 http://dx.doi.org/10.3390/e24020276 |
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author | Zhan, Ling Jia, Tao |
author_facet | Zhan, Ling Jia, Tao |
author_sort | Zhan, Ling |
collection | PubMed |
description | Heterogeneous information network (HIN) embedding is an important tool for tasks such as node classification, community detection, and recommendation. It aims to find the representations of nodes that preserve the proximity between entities of different nature. A family of approaches that are widely adopted applies random walk to generate a sequence of heterogeneous contexts, from which, the embedding is learned. However, due to the multipartite graph structure of HIN, hub nodes tend to be over-represented to their context in the sampled sequence, giving rise to imbalanced samples of the network. Here, we propose a new embedding method: CoarSAS2hvec. The self-avoiding short sequence sampling with the HIN coarsening procedure (CoarSAS) is utilized to better collect the rich information in HIN. An optimized loss function is used to improve the performance of the HIN structure embedding. CoarSAS2hvec outperforms nine other methods in node classification and community detection on four real-world data sets. Using entropy as a measure of the amount of information, we confirm that CoarSAS catches richer information of the network compared with that through other methods. Hence, the traditional loss function applied to samples by CoarSAS can also yield improved results. Our work addresses a limitation of the random-walk-based HIN embedding that has not been emphasized before, which can shed light on a range of problems in HIN analyses. |
format | Online Article Text |
id | pubmed-8870891 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-88708912022-02-25 CoarSAS2hvec: Heterogeneous Information Network Embedding with Balanced Network Sampling Zhan, Ling Jia, Tao Entropy (Basel) Article Heterogeneous information network (HIN) embedding is an important tool for tasks such as node classification, community detection, and recommendation. It aims to find the representations of nodes that preserve the proximity between entities of different nature. A family of approaches that are widely adopted applies random walk to generate a sequence of heterogeneous contexts, from which, the embedding is learned. However, due to the multipartite graph structure of HIN, hub nodes tend to be over-represented to their context in the sampled sequence, giving rise to imbalanced samples of the network. Here, we propose a new embedding method: CoarSAS2hvec. The self-avoiding short sequence sampling with the HIN coarsening procedure (CoarSAS) is utilized to better collect the rich information in HIN. An optimized loss function is used to improve the performance of the HIN structure embedding. CoarSAS2hvec outperforms nine other methods in node classification and community detection on four real-world data sets. Using entropy as a measure of the amount of information, we confirm that CoarSAS catches richer information of the network compared with that through other methods. Hence, the traditional loss function applied to samples by CoarSAS can also yield improved results. Our work addresses a limitation of the random-walk-based HIN embedding that has not been emphasized before, which can shed light on a range of problems in HIN analyses. MDPI 2022-02-14 /pmc/articles/PMC8870891/ /pubmed/35205570 http://dx.doi.org/10.3390/e24020276 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhan, Ling Jia, Tao CoarSAS2hvec: Heterogeneous Information Network Embedding with Balanced Network Sampling |
title | CoarSAS2hvec: Heterogeneous Information Network Embedding with Balanced Network Sampling |
title_full | CoarSAS2hvec: Heterogeneous Information Network Embedding with Balanced Network Sampling |
title_fullStr | CoarSAS2hvec: Heterogeneous Information Network Embedding with Balanced Network Sampling |
title_full_unstemmed | CoarSAS2hvec: Heterogeneous Information Network Embedding with Balanced Network Sampling |
title_short | CoarSAS2hvec: Heterogeneous Information Network Embedding with Balanced Network Sampling |
title_sort | coarsas2hvec: heterogeneous information network embedding with balanced network sampling |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8870891/ https://www.ncbi.nlm.nih.gov/pubmed/35205570 http://dx.doi.org/10.3390/e24020276 |
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