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Different Shades of Kale—Approaches to Analyze Kale Variety Interrelations

Brassica oleracea is a vegetable crop with an amazing morphological diversity. Among the various crops derived from B. oleracea, kale has been in the spotlight globally due to its various health-benefitting compounds and many different varieties. Knowledge of the existing genetic diversity is essent...

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Autores principales: Hahn, Christoph, Howard, Nicholas P., Albach, Dirk C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8872201/
https://www.ncbi.nlm.nih.gov/pubmed/35205277
http://dx.doi.org/10.3390/genes13020232
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author Hahn, Christoph
Howard, Nicholas P.
Albach, Dirk C.
author_facet Hahn, Christoph
Howard, Nicholas P.
Albach, Dirk C.
author_sort Hahn, Christoph
collection PubMed
description Brassica oleracea is a vegetable crop with an amazing morphological diversity. Among the various crops derived from B. oleracea, kale has been in the spotlight globally due to its various health-benefitting compounds and many different varieties. Knowledge of the existing genetic diversity is essential for the improved breeding of kale. Here, we analyze the interrelationships, population structures, and genetic diversity of 72 kale and cabbage varieties by extending our previous diversity analysis and evaluating the use of summed potential lengths of shared haplotypes (SPLoSH) as a new method for such analyses. To this end, we made use of the high-density Brassica 60K SNP array, analyzed SNPs included in an available Brassica genetic map, and used these resources to generate and evaluate the information from SPLoSH data. With our results we could consistently differentiate four groups of kale across all analyses: the curly kale varieties, Italian, American, and Russian varieties, as well as wild and cultivated types. The best results were achieved by using SPLoSH information, thus validating the use of this information in improving analyses of interrelations in kale. In conclusion, our definition of kale includes the curly varieties as the kales in a strict sense, regardless of their origin. These results contribute to a better understanding of the huge diversity of kale and its interrelations.
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spelling pubmed-88722012022-02-25 Different Shades of Kale—Approaches to Analyze Kale Variety Interrelations Hahn, Christoph Howard, Nicholas P. Albach, Dirk C. Genes (Basel) Article Brassica oleracea is a vegetable crop with an amazing morphological diversity. Among the various crops derived from B. oleracea, kale has been in the spotlight globally due to its various health-benefitting compounds and many different varieties. Knowledge of the existing genetic diversity is essential for the improved breeding of kale. Here, we analyze the interrelationships, population structures, and genetic diversity of 72 kale and cabbage varieties by extending our previous diversity analysis and evaluating the use of summed potential lengths of shared haplotypes (SPLoSH) as a new method for such analyses. To this end, we made use of the high-density Brassica 60K SNP array, analyzed SNPs included in an available Brassica genetic map, and used these resources to generate and evaluate the information from SPLoSH data. With our results we could consistently differentiate four groups of kale across all analyses: the curly kale varieties, Italian, American, and Russian varieties, as well as wild and cultivated types. The best results were achieved by using SPLoSH information, thus validating the use of this information in improving analyses of interrelations in kale. In conclusion, our definition of kale includes the curly varieties as the kales in a strict sense, regardless of their origin. These results contribute to a better understanding of the huge diversity of kale and its interrelations. MDPI 2022-01-26 /pmc/articles/PMC8872201/ /pubmed/35205277 http://dx.doi.org/10.3390/genes13020232 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Hahn, Christoph
Howard, Nicholas P.
Albach, Dirk C.
Different Shades of Kale—Approaches to Analyze Kale Variety Interrelations
title Different Shades of Kale—Approaches to Analyze Kale Variety Interrelations
title_full Different Shades of Kale—Approaches to Analyze Kale Variety Interrelations
title_fullStr Different Shades of Kale—Approaches to Analyze Kale Variety Interrelations
title_full_unstemmed Different Shades of Kale—Approaches to Analyze Kale Variety Interrelations
title_short Different Shades of Kale—Approaches to Analyze Kale Variety Interrelations
title_sort different shades of kale—approaches to analyze kale variety interrelations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8872201/
https://www.ncbi.nlm.nih.gov/pubmed/35205277
http://dx.doi.org/10.3390/genes13020232
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